Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20940 644 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT5G10020 380 / 2e-116 Leucine-rich receptor-like protein kinase family protein (.1.2) AT2G27060 313 / 6e-92 Leucine-rich repeat protein kinase family protein (.1) AT5G56040 268 / 2e-75 Leucine-rich receptor-like protein kinase family protein (.1.2) AT2G26330 266 / 3e-75 QRP1, ER QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1, ERECTA, Leucine-rich receptor-like protein kinase family protein (.1) AT3G24240 267 / 6e-75 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT3G51740 260 / 7e-74 IMK2 inflorescence meristem receptor-like kinase 2 (.1) AT4G36180 264 / 9e-74 Leucine-rich receptor-like protein kinase family protein (.1) AT4G26540 263 / 1e-73 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT4G08850 261 / 4e-73 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038544 [exp] 1206 / 0 AT4G20940 1035 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10026756 [exp] 340 / 2e-101 AT2G27060 961 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10025541 [exp] 339 / 4e-101 AT2G27060 958 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10012877 [exp] 276 / 8e-79 AT3G56370 1162 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032954 [exp] 269 / 1e-75 AT5G56040 1399 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10030526 [exp] 265 / 9e-75 AT3G56370 1170 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10022679 [exp] 256 / 5e-73 AT3G51740 926 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10022738 [exp] 258 / 1e-72 AT5G01890 1035 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10012225 [exp] 249 / 5e-72 AT3G51740 679 / 0.0 inflorescence meristem receptor-like kinase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G465800 [exp] 807 / 0 AT4G20940 915 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.011G163700 [exp] 730 / 0 AT4G20940 946 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.004G197500 [exp] 553 / 0 AT2G27060 1053 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G083000 [exp] 379 / 1e-115 AT5G10020 1140 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.007G082800 [exp] 363 / 1e-109 AT5G10020 1132 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.013G091000 [exp] 297 / 2e-86 AT3G56370 1227 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G183400 [exp] 291 / 9e-85 AT3G51740 903 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Potri.016G126300 [exp] 287 / 1e-83 AT3G51740 1038 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Potri.006G108600 [exp] 273 / 8e-78 AT5G01890 1115 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.006G104300 [exp] 269 / 4e-77 AT3G51740 996 / 0.0 inflorescence meristem receptor-like kinase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10023260 pacid=23180929 polypeptide=Lus10023260 locus=Lus10023260.g ID=Lus10023260.BGIv1.0 annot-version=v1.0 ATGGCTCAGCTTCCCTCCCAGGATATCTTGGCATTGCTTGAGTTCAAGAAGGGTATCAAGCATGACCCTACTGGATATGTTCTTCAGTCATGGAACGAGG AATCCATAGACTTCAATGGCTGCCCTTCTTCCTGGAATGGCATAGTCTGCAATGGAGGTAACGTTGCTGGAGTTGTTCTTGACAACTTGGACCTCTCAGC TGATGCAGACTTGACCGTGTTTGCCAATCTCACAATGCTTGTTAAACTATCCATGGCCAACAACTCCATGACTGGCCAAGTCCCTGACAACATTGGAGAC TTCAAAGTCCTGCAGTTCTTGGATCTTTCCAACAATCTGTTCAACTCATCTTTGCCCTCGGGGATTGGCAAATTGGGGAGCTTGAGGAACCTATCTCTTG CTAGAAACAACTTCTCTGGTCCAGTTCCTGACTCCATTTCTGGACTTGCATCCCTGCAGTCATTGGATTTGAGTAAGAACTCCCTTTCCGGTTCAATACC GGGATCACTGACCAGAATGGATAGCCTGGTTTATCTAGACTTGTCTTCAAACCTGTTGGGGAAGAAGATTCCAAGAGGATTCGAGCTGATTTCGGGTCTG CAGGTGCTTGATTTGCATGGAAATATTCTTGATGGTCATCTTGATGGGGAGTTCTTCCTTTTAACAAATGCTAGCTATGTGGATTTCAGTGGGAATATGT TAGGGGACTCTGGTTCTGGGAAATTGCTGCCAGGTATCTCTGATAGCATCAAGTACTTAAACTTGAGCCGGAATCAGTTAGCTGGATCGTTGTTGAGTGG CAGTGAGCTACGTTTGTTCTCAAGCTTGAAGGTGTTGGATTTAAGCTACAATCAGCTCTCTGGGGAGCTGCCTGGATTCGATTATGCTTACGAGCTTCAA GTCCTTAAACTTAGCAACAATATGTTCTCAGGGTTCGTTCCTAATGACCTGTTGAAAGGAGATTCATTGCTTTTAAGCGAGTTGGATTTGAGTGCCAACA ATCTATCAGGGCCGATAACTGCGATTATGTCGACAACTCTGCACATACTTAATCTGTCATCGAACAGTCTCAAGGGAGAGCTTCCTTTGTTGACTGGAGG ATGTGCTGTCCTTGATCTATCTGGCAACCAGTTTGAAGGGAATCTTTCCAGAGTCTTGAAGTGGGGTGATGTTGAGTATCTCGATCTTAGCCGGAATCGT CTGATAGGTCCACTTCCCGAAGCATCCTCTCAACTTATGCGGTTGAACCATCTCAACCTCTCATATAACTCTCTTACTGGCTCTCTTCCAAGATCCATCA CACAATACTCCAAAATGACAGTGCTTGATCTTAGCTCCAATCAGTTTGAAGGACATTTACTCTCTGATCTATTAACTTCGGCGACATTGCAGCAACTTCG CCTCAGCCATAACTCATTGACCGGTGATATTGAGTTTGGTGCTCCACCCAACAGCAAATCAGACCTTGAAATTCTCGATCTTTCTCACAATCAGTTCGAT GACTATTTCCCTGATCGGTTTGGGTCGCTTGCTGGACTAAAAGAGCTCAATCTTGCAGGGAACAACATTTCTGGCTCTCTGCCAACTTCCATGGCCGGCA TGAGTTCACTAACCTTGCTCGATCTGTCGCAGAATCGTTTCACAGTTTCTGCTGAGGATCTCGTAGCAGCTCGAAAGGGGTCATCATCCGAGATCCTTAG CCCCGACGAGAAACTAGCTTCAGTAACTGGTGGACGATTCTCCTCCCCTTCGAAGCAAAGCCGGTACTCATGGTCCCCCGAGTCTGGTGGGGAATCATTG CCCACAGAATCTTTGGCAAGACTCGATGTGAGGTCACCGGACCGGTTAGTGGGGGAGCTGCATTTCCTTGATGATGCCATAACTCTGACCCCTGAGGAAT TGTCAAGAGCTCCAGCTGAAGTGTTGGGGAGGAGCAGCCATGGGACTTCCTACAGAGCAACTCTTGACAATGGCGTGTTCTTGACGGTGAAATGGTTGAG AGAAGGTGTGGCGAAACCGAAGAAAGATTTCTTGAGAGAAGGTGTGGCGAAACCGAAGATGGATTTTGCTAAAGAGGCTCGGAAGTTCACCAACATCAGG CACCCTAATGTGGTTGGATTGAGAGGGTATTACTGGGGGCCAACTCAACATGAGAAGCTCATTCTTTCAGACTACATCTCTCCTGGAAGTCTGGCCAGCT TTTTGTTTGATAAGCCAGGAAGAAGAGGGCCACCTCTAACATGGCCACAAAGACTGAAAGTATCAGTGGACGTCGCACGTAGCCTAAACTATCTCCATTT CGACCGCGCAGTCCCACACGGGAACCTCAAGGCCACAAACATACTCCTCGACGGCCCCGAGCCGAATGCACGAGTCTCGGACTACTGCCTGCACCGCCTG ATGACACAGGCGGGCACAGTGGTCCAAATCCTGGACGCTGGAGTGCTAGGATACCGAGCACCGGAGCTAGCTGCTTCTAAGAAACCGGCGCCTTCCTTCA AGTCGGATGTGTATGCATTCGGAGTCATACTATTGGAGATACTTACGGGAAGGTGTGCCGGTGATGTGATCACGGGGGAAGAAGGGGCAGTGGACTTGAC GGACTGGATCAAACTGAGGGTGGCGGAAGGTCGTGGGACCGAATGTATCGATGCAGCGATGGTGCAGGAAGTGGGGAATCCGGGAGTTGAGAAAGGGATG AAGGAAGTGCTTGGGATTGCTTTGAGGTGTATAAGGTCAGTGAATGAGAGGCCGGGGATCAAGACCATATATGAAGATCTGTCTTCTGTTTAG
AA sequence Show only first row Show all	>Lus10023260 pacid=23180929 polypeptide=Lus10023260 locus=Lus10023260.g ID=Lus10023260.BGIv1.0 annot-version=v1.0 MAQLPSQDILALLEFKKGIKHDPTGYVLQSWNEESIDFNGCPSSWNGIVCNGGNVAGVVLDNLDLSADADLTVFANLTMLVKLSMANNSMTGQVPDNIGD FKVLQFLDLSNNLFNSSLPSGIGKLGSLRNLSLARNNFSGPVPDSISGLASLQSLDLSKNSLSGSIPGSLTRMDSLVYLDLSSNLLGKKIPRGFELISGL QVLDLHGNILDGHLDGEFFLLTNASYVDFSGNMLGDSGSGKLLPGISDSIKYLNLSRNQLAGSLLSGSELRLFSSLKVLDLSYNQLSGELPGFDYAYELQ VLKLSNNMFSGFVPNDLLKGDSLLLSELDLSANNLSGPITAIMSTTLHILNLSSNSLKGELPLLTGGCAVLDLSGNQFEGNLSRVLKWGDVEYLDLSRNR LIGPLPEASSQLMRLNHLNLSYNSLTGSLPRSITQYSKMTVLDLSSNQFEGHLLSDLLTSATLQQLRLSHNSLTGDIEFGAPPNSKSDLEILDLSHNQFD DYFPDRFGSLAGLKELNLAGNNISGSLPTSMAGMSSLTLLDLSQNRFTVSAEDLVAARKGSSSEILSPDEKLASVTGGRFSSPSKQSRYSWSPESGGESL PTESLARLDVRSPDRLVGELHFLDDAITLTPEELSRAPAEVLGRSSHGTSYRATLDNGVFLTVKWLREGVAKPKKDFLREGVAKPKMDFAKEARKFTNIR HPNVVGLRGYYWGPTQHEKLILSDYISPGSLASFLFDKPGRRGPPLTWPQRLKVSVDVARSLNYLHFDRAVPHGNLKATNILLDGPEPNARVSDYCLHRL MTQAGTVVQILDAGVLGYRAPELAASKKPAPSFKSDVYAFGVILLEILTGRCAGDVITGEEGAVDLTDWIKLRVAEGRGTECIDAAMVQEVGNPGVEKGM KEVLGIALRCIRSVNERPGIKTIYEDLSSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20940			Leucine-rich receptor-like pro...		Lus10023260 [exp]	0	1
AT2G40030		NRPE1, DMS5, AT...	DEFECTIVE IN MERISTEM SILENCIN...		Lus10016332 [exp]	1.7	0.9510
AT2G38370			Plant protein of unknown funct...		Lus10025249 [exp]	3.2	0.9454
AT3G51290			Protein of unknown function (D...		Lus10041885 [exp]	3.5	0.9506
AT2G25270			unknown protein		Lus10001929 [exp]	4.2	0.9422
AT5G26850			Uncharacterized protein (.1.2....		Lus10020697 [exp]	4.6	0.9487
AT5G04290		SPT5L, KTF1	SPT5-LIKE, kow domain-containi...		Lus10037946 [exp]	4.9	0.9294
AT4G35930			F-box family protein (.1)		Lus10041876 [exp]	6.0	0.9470
AT1G26110		DCP5	decapping 5 (.1.2)		Lus10033287 [exp]	6.3	0.9164
AT5G43810		PNH, ZLL, AGO10	ZWILLE, PINHEAD, ARGONAUTE 10,...		Lus10006627 [exp]	6.9	0.9031
AT2G46980			unknown protein		Lus10038019 [exp]	7.9	0.9404

Compare expression of checked genes

Lus10023260 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.