Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30540 475 / 1e-168 Actin-like ATPase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038542 [exp] 690 / 0 AT1G30540 493 / 5e-176 Actin-like ATPase superfamily protein (.1) Lus10033600 [exp] 474 / 5e-168 AT1G30540 491 / 3e-175 Actin-like ATPase superfamily protein (.1) Lus10017642 [exp] 472 / 2e-167 AT1G30540 489 / 2e-174 Actin-like ATPase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G164500 [exp] 531 / 0 AT1G30540 523 / 0.0 Actin-like ATPase superfamily protein (.1) Potri.001G466900 [exp] 525 / 0 AT1G30540 518 / 0.0 Actin-like ATPase superfamily protein (.1) Potri.014G143500 [exp] 470 / 1e-166 AT1G30540 473 / 2e-168 Actin-like ATPase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF01869 [flax] [poplar] BcrAD_BadFG BadF/BadG/BcrA/BcrD ATPase family
Representative CDS sequence Show only first row Show all	>Lus10023262 pacid=23181024 polypeptide=Lus10023262 locus=Lus10023262.g ID=Lus10023262.BGIv1.0 annot-version=v1.0 ATGGATGGTCCAACACATTGCAACGGAACCACACTATCGTCTCTAGATCATGTTCGCCTCGCTGGAGCAGAAGCAGAAGCCGAAGCAGCAGGAGTCTCGC ATTCTCCTTCCGAAAATGGTGGAACCGGATCCGCCGGAGTCGTACTTGGCGTTGACGGCGGCACCACCTCAACGGTATGCGTGTGTATGCCGTTTCTGGA TTTGAGTGACAGCTCACCCGATCCCCTCCCCATTCTCGCACGCGCCGTCGCCGGTTGCTCCAATCACAACAGCGTCGGAGAAACTGCTGCAAGAGAAACT TTGGAACATGTAATGACGGAAGCCCTTTCGAAATCAAGCTCTACAATGTCTGCTGTTCGTGCTGTTTGCTTAGGTGTGTCTGGTGTGAACCACCCGACTG ATCAAGAGAGGGTACTAAATTGGCTCAGGGACATATTTCCTAGCCATGTGAAGTTATATGTATGTAATGATGCTGTTGCTGCTTTAGCAAGTGGGACCAT GGGAAGGCTCCATGGATGCGTCTTGATTGCCGGTACAGGATGCATCTCTTATGGTATTGCTGATGATGGTCGAGAAGCTCGGGCTTCAGGTGCAGGGCCT GTCTTGGGTGATTGGGGAAGTGGATATGGAATCGCAGCACGTGCTTTAACAGCAGTGATAAGGGCTCATGATGGACGTGGGCCACAGACAAAGCTTACAA ACAAAATACTGAAGACACTTGGCCTTTCTTCTCCTGATGAAATCATCGGGTGGACTTATGCGGATTCATCTTGGGCACGCATTGCAGCTCTAGTTCCAGA AGTGGTATCTTGTGCGGAAGATTCTGACGAAGTTGCGGATAAAATTCTAGTTAACGCGGTACAAGAATTGGCAACAAGTGTGAAGGCAGTTGCCGAACGG CTAAGTTTGTGTGGCGAAGATGGTAAAGGGCGTTTCCCTGTGGTAATGGTGGGTGGCGTCCTTGAAGCAAACAAGGGATGGGATATAGGAAATGAAGTGA TGAAATGCATTAGGCGACACTTCAGTGGCGCTTATGCAGTTAGACCACAGGTGGAACCTGCAGTGGGAGCAGCTCTACTGGCTACGCATAACTTCATTAA AGAAACAAGTTCAAGAGCTACAAGCAACTGTCGTAACTAA
AA sequence Show only first row Show all	>Lus10023262 pacid=23181024 polypeptide=Lus10023262 locus=Lus10023262.g ID=Lus10023262.BGIv1.0 annot-version=v1.0 MDGPTHCNGTTLSSLDHVRLAGAEAEAEAAGVSHSPSENGGTGSAGVVLGVDGGTTSTVCVCMPFLDLSDSSPDPLPILARAVAGCSNHNSVGETAARET LEHVMTEALSKSSSTMSAVRAVCLGVSGVNHPTDQERVLNWLRDIFPSHVKLYVCNDAVAALASGTMGRLHGCVLIAGTGCISYGIADDGREARASGAGP VLGDWGSGYGIAARALTAVIRAHDGRGPQTKLTNKILKTLGLSSPDEIIGWTYADSSWARIAALVPEVVSCAEDSDEVADKILVNAVQELATSVKAVAER LSLCGEDGKGRFPVVMVGGVLEANKGWDIGNEVMKCIRRHFSGAYAVRPQVEPAVGAALLATHNFIKETSSRATSNCRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30540			Actin-like ATPase superfamily ...		Lus10023262 [exp]	0	1
AT2G26670		GUN2, ATHO1, TE...	REVERSAL OF THE DET PHENOTYPE ...		Lus10030092 [exp]	11.0	0.9204
AT2G01300			unknown protein		Lus10004062 [exp]	15.5	0.8978
AT5G03860		MLS	malate synthase (.1.2)		Lus10020565 [exp]	18.4	0.9064
AT3G21510		ATHP3, AHP1	histidine-containing phosphotr...		Lus10002256 [exp]	19.7	0.9028
AT4G32480			Protein of unknown function (D...		Lus10015437 [exp]	25.4	0.9050
AT2G32150			Haloacid dehalogenase-like hyd...		Lus10004914 [exp]	30.7	0.9001
AT1G12780		ATUGE1, UGE1	A. THALIANA UDP-GLC 4-EPIMERAS...		Lus10002246 [exp]	33.6	0.9044
AT2G27180			unknown protein		Lus10013375 [exp]	37.1	0.9000
AT5G37600		ATGLN1;1, GLN1;...	ARABIDOPSIS THALIANA GLUTAMINE...		Lus10012536 [exp]	43.0	0.8914
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10037662 [exp]	47.8	0.8585

Compare expression of checked genes

Lus10023262 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.