Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23880 48 / 1e-06 F-box and associated interaction domains-containing protein (.1) AT4G12560 47 / 2e-06 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) AT4G22390 47 / 2e-06 F-box associated ubiquitination effector family protein (.1) AT3G16210 40 / 0.0005 F-box family protein (.1) AT1G32600 40 / 0.0007 F-box associated ubiquitination effector family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038541 [exp] 91 / 2e-23 AT3G52320 45 / 2e-06 F-box and associated interaction domains-containing protein (.1) Lus10014136 [exp] 87 / 1e-21 AT3G06240 45 / 2e-10 F-box family protein (.1) Lus10011015 [exp] 85 / 2e-19 AT3G06240 94 / 7e-21 F-box family protein (.1) Lus10006687 [exp] 84 / 2e-19 AT4G12560 81 / 5e-17 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10006697 [exp] 75 / 9e-16 AT4G12560 80 / 4e-16 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10007040 [exp] 67 / 6e-13 AT3G06240 86 / 4e-18 F-box family protein (.1) Lus10023238 [exp] 45 / 1e-05 AT3G23880 126 / 6e-33 F-box and associated interaction domains-containing protein (.1) Lus10008871 [exp] 45 / 2e-05 AT4G12560 135 / 1e-35 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10023239 [exp] 43 / 8e-05 AT3G23880 130 / 3e-34 F-box and associated interaction domains-containing protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023263 pacid=23180917 polypeptide=Lus10023263 locus=Lus10023263.g ID=Lus10023263.BGIv1.0 annot-version=v1.0 ATGGCCGGACAGAAAGGAAAGAAGAAGGCCGGCTTCTACAGTCGAAAACGGCTTCCGATTGTCTTCCTTACCGGAGGACATAGTCTTGCACATCTTGGTC AGACTTCCGGCGAAGACTCTGGTACGATTCAAGTGCTTATCCAAACGCATTCACCATCTCATTCAATCCCCATATTGCGTGGCTGCACACGCCGACCATC AAGTCGCGAATCGTGCCGGACTCTCCCTCCTCACTTACCGGCTCGGGGAGCCGGAAAGAAGGGATTTCCGTGCCTGCTTTTGCGGAATCCAGAAAATATG TCTCTCTGGAATCCAACCACCTACCAGTTCTGCTTTGCTTCTCTCCCGTCGTCGTATGCTAAATGTTATGCGATGTACGGATTTGGGTACAATTCTGTGT CGGATGATTTCAAGTCAATAAGGATTGTCTTGCGGAAGAATCATCGTGGTCCCGCCCCAGCGGAGGTTCTGAGTTGGAGGAAGAGGACTTGGACGAAGCT CACAGCCGAATCACGGAGCTTCTTAGACCTACAAACCATTGAAATCTTGATCGATCGTCCAATTCTGTGA
AA sequence Show only first row Show all	>Lus10023263 pacid=23180917 polypeptide=Lus10023263 locus=Lus10023263.g ID=Lus10023263.BGIv1.0 annot-version=v1.0 MAGQKGKKKAGFYSRKRLPIVFLTGGHSLAHLGQTSGEDSGTIQVLIQTHSPSHSIPILRGCTRRPSSRESCRTLPPHLPARGAGKKGFPCLLLRNPENM SLWNPTTYQFCFASLPSSYAKCYAMYGFGYNSVSDDFKSIRIVLRKNHRGPAPAEVLSWRKRTWTKLTAESRSFLDLQTIEILIDRPIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23880			F-box and associated interacti...		Lus10023263 [exp]	0	1
AT3G18370		NTMCTYPE3, ATSY...	C2 domain-containing protein (...		Lus10009672 [exp]	7.7	0.6656
AT1G47480			alpha/beta-Hydrolases superfam...		Lus10034068 [exp]	24.9	0.6248
AT4G10955			alpha/beta-Hydrolases superfam...		Lus10023072 [exp]	34.7	0.5971
AT1G05680		UGT74E2	Uridine diphosphate glycosyltr...		Lus10006720 [exp]	79.0	0.5238
AT1G80450			VQ motif-containing protein (....		Lus10020092 [exp]	96.9	0.5256
AT1G11340			S-locus lectin protein kinase ...		Lus10017247 [exp]	136.3	0.5123
AT2G39210			Major facilitator superfamily ...		Lus10038682 [exp]	237.8	0.4714
AT5G38460			ALG6, ALG8 glycosyltransferase...		Lus10033554 [exp]	253.0	0.4651

Compare expression of checked genes

Lus10023263 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.