Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34730 361 / 9e-112 myosin heavy chain-related (.1.2) AT5G14990 59 / 2e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038540 [exp] 1586 / 0 AT2G34730 360 / 2e-111 myosin heavy chain-related (.1.2) Lus10036529 [exp] 66 / 5e-11 AT5G14990 177 / 2e-49 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G164400 [exp] 688 / 0 AT2G34730 432 / 2e-138 myosin heavy chain-related (.1.2) Potri.001G466800 [exp] 583 / 0 AT2G34730 390 / 7e-123 myosin heavy chain-related (.1.2) Potri.010G222200 [exp] 84 / 3e-16 AT5G14990 211 / 2e-58 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023264 pacid=23181017 polypeptide=Lus10023264 locus=Lus10023264.g ID=Lus10023264.BGIv1.0 annot-version=v1.0 ATGGGGAGCCAAGAGACTTTGGATACTGTCAAATGTAATGGCAAGTCGATGCAGCATTTGAATGATGTTGAGGAGAATCACCATTTGGATATGATCGATG ATTTCGAATTATACATGGACGACATCAACAACCGGCTTACCATTGCGAGGATGGTGAATGTATCAGTAATGAAAGGCATGGTATCTGCAGTAGAACACGA TGCAGCTGAGCAAATTGCTAAGAAAGATTTGGAATTAGCTAGACTGAAAGAAATCTTACATCCTCGTCAATTGAGGCTAAACGACTGCGAAGCCTCCTGT GGCTCGACAATGTCTGAAGAGCTTAATAGTGATAGGATAAGTGAATGTGATAGTTCACAAGGATGTGTTCAGAAGCTTACCTTGGCTGCTAGTGAGCAGT TAAAGAAGCTTAAGATAGAAATCGACAAAGTTAAAGGTTCTTGTCCTCTGAGGAAGAAGACTTCAGCTCCTGAGTTTTTGGGATTAGGCGGTATTTTGCC TGAAAAGGTGGCCGATAAGTGGGATAGTGTGGACAAAAGTCTTCAAGATTTGAGAAAAGTTATGTACTCTCTCTGCAAACTGAATGAAGATGCAGTCCAA CAAGAAATCGAAGGAATGGTGATGAAGACTTGCGTTAGTGATCTCCGTGAAGTACAGACTTATAATCATGATAGTGCAAACTTGCTCGAAGGAAAGATTA CAGAGTTGTCCAGTCTACGTGAAGAATTGGATGTGATTTCTCGTATGTTGACAGTTCCCGAGAACGGAAAGCTTGTTTCGCACGCGTCTTTGGACCATAA GAAGTTTCCGTCCAGTCATATTTCATTGACACATTCACTTTGGGAAGGAAATGGGAAACGAGCAGATTCGGAAGTTACTACGCCAGAAAAATCTGATCAT TCACAATTAAGGCACTTGACATGGGATGAATTAGCAAGCCATTATAAGTCTGAGATGATGAAAATGAAGAGACAGCATGAGTCAGAAGTGCAAAAGATTA CAGAAGAATATTTCGTCCTCAAAAGAGAGTACTTGAAAGAAAGATCATCTTGTCTACCTTTGAAAAGGGATAATAAGGAGTTTGAAGAACTGAGAAAGAA AATTTCGGGGGTTAGTTCGTTGTTGGATAGGATTATTTTGGAGAATGAGAAACTGGCTCCACGGAGTAATGTTGGAGAGTCACTTGACTTTTTAAACCAC AGGTTGGAAATCCTTTCTGTAGAAAATCACAAACTAAGAGACACACTAGCAGATAGAGAAAGGGAGATTAAGTTGCTCTTATCTCGGGTTTCTGATGCTG CTGAAAAAATTTCAGAAGGTTCATTTACTGAAGCAAACTTGCTTAGGGCCATTGCAAATCTTATATCGGATAAAGAAGATGCACGCATCGAAGCTTTACT CAGTGATGACCTATATAAGTTCCTTATCAAGGAGGCGATTTTCCAGAATGAATGCACTTTGGAAGAGCTAGCATTGGAGATTGATATTGGAAAGGGGATT TATGAATGTATGTTCAATGAAGCAGGTAAAACCTATGAGCCCGTTTTGAAGTGTCAAGTTGAAGATGCAGATTTGGAGTCCATTATTATGGAAGGATTAT GTGATGTCATCTATAGAGGAGCCTTCCAGGAAGCTGAGAGAGAGCTCTGTAAATTAAACCAGAAATATGTGAATGAAAGTGAAGCTCGATCAGTGCTTGA GATCAAAGCATTGGAAAATGTTGCTGAGAAAGAAAACTTACAGAGACAGATTGTTACACTGGAAATAAGAATTGATGAGAAGGAGAAGGTAGCGCAAGAG ATATTAGATGCACTGAGATCAGAGAAGGAGAAAAACGTGTTAATTTCGCAAGAGGTTGATAGGTTGAAGGCACATACTAGTGAGCAGCAGTTATTAATTT CACAAAGCAGGTCAGAATCGGAAGTAATTAGTGATCAGCTGCTTGAAGCATTGGAGAACGTAGAAATGCATAGGAATGACAATTGCAAGCTGAGACGGAA AATTGAGCTACTTACAGAGAAGTCCAAGGAAATTGCCGACGAAAAACTCAAACTCATCACTGTTGCTGAAGAGAGGCTACATGCTTTGTCACAGTGTGAG GCGAGAGAAAGGGAATGGAAAAAAGAAACCTTCTCAACAATTGCTCTTGTGAATGGTTTATCCAAATCTGTCAGCGATTTCCAGTGCAGAACGGAAGATA TTATATCCAGAAATAGGTCGAGGTTGGAAAATACGAACTCGCAAGTGAGTTGTCTTAATCAGAAGGCTGCCAGGCTGAAGAAAATGGTGTTTCTGTACAA GGAGGCGTTGAAGAGGAAGAACACTGACCTTGAAAAGGCTGAATCTGAGGTTGACCTTCTGGGAGATGAGGTGGACACTCTTCTAAGCCTTCTGGAAAAG ATTTACATAGCATTAGACCATTATTCTCCAATACTGCAACACTATCCCGGAATAATCGAAATCCTGAAGCTGGTTAGAAGAGAATTGAGTGGCGAATCGA AAACAACCACGGAAGATAATGATGGTCAGAAGTGGAAGAGAGCGACGGGACGAGTACCCAGCAGTGGAACAAAGGCGACAGTTTGA
AA sequence Show only first row Show all	>Lus10023264 pacid=23181017 polypeptide=Lus10023264 locus=Lus10023264.g ID=Lus10023264.BGIv1.0 annot-version=v1.0 MGSQETLDTVKCNGKSMQHLNDVEENHHLDMIDDFELYMDDINNRLTIARMVNVSVMKGMVSAVEHDAAEQIAKKDLELARLKEILHPRQLRLNDCEASC GSTMSEELNSDRISECDSSQGCVQKLTLAASEQLKKLKIEIDKVKGSCPLRKKTSAPEFLGLGGILPEKVADKWDSVDKSLQDLRKVMYSLCKLNEDAVQ QEIEGMVMKTCVSDLREVQTYNHDSANLLEGKITELSSLREELDVISRMLTVPENGKLVSHASLDHKKFPSSHISLTHSLWEGNGKRADSEVTTPEKSDH SQLRHLTWDELASHYKSEMMKMKRQHESEVQKITEEYFVLKREYLKERSSCLPLKRDNKEFEELRKKISGVSSLLDRIILENEKLAPRSNVGESLDFLNH RLEILSVENHKLRDTLADREREIKLLLSRVSDAAEKISEGSFTEANLLRAIANLISDKEDARIEALLSDDLYKFLIKEAIFQNECTLEELALEIDIGKGI YECMFNEAGKTYEPVLKCQVEDADLESIIMEGLCDVIYRGAFQEAERELCKLNQKYVNESEARSVLEIKALENVAEKENLQRQIVTLEIRIDEKEKVAQE ILDALRSEKEKNVLISQEVDRLKAHTSEQQLLISQSRSESEVISDQLLEALENVEMHRNDNCKLRRKIELLTEKSKEIADEKLKLITVAEERLHALSQCE AREREWKKETFSTIALVNGLSKSVSDFQCRTEDIISRNRSRLENTNSQVSCLNQKAARLKKMVFLYKEALKRKNTDLEKAESEVDLLGDEVDTLLSLLEK IYIALDHYSPILQHYPGIIEILKLVRRELSGESKTTTEDNDGQKWKRATGRVPSSGTKATV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34730			myosin heavy chain-related (.1...		Lus10023264 [exp]	0	1
AT4G11640		ATSR	serine racemase (.1)		Lus10008490 [exp]	3.7	0.9091
AT1G73020			unknown protein		Lus10009732 [exp]	6.6	0.8962
AT4G34020		AtDJ1C	DJ-1 homolog C, Class I glutam...		Lus10014067 [exp]	6.9	0.8801
AT3G54980			Pentatricopeptide repeat (PPR)...		Lus10019524 [exp]	7.7	0.8951
AT5G44090			Calcium-binding EF-hand family...		Lus10008247 [exp]	8.5	0.8993
AT5G14590			Isocitrate/isopropylmalate deh...		Lus10013090 [exp]	8.7	0.8988
AT5G14250		CSN3, FUS11, CO...	FUSCA 11, COP9 SIGNALOSOME SUB...		Lus10041586 [exp]	10.6	0.8913
AT1G76480			unknown protein		Lus10006035 [exp]	13.0	0.8956
					Lus10027262 [exp]	13.4	0.8127
AT5G19840			2-oxoglutarate (2OG) and Fe(II...		Lus10000493 [exp]	16.7	0.8881

Compare expression of checked genes

Lus10023264 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.