Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21160 467 / 3e-166 ZAC, AGD12 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) AT4G05330 461 / 7e-164 AGD13 ARF-GAP domain 13 (.1) AT3G07940 308 / 7e-103 Calcium-dependent ARF-type GTPase activating protein family (.1) AT1G70800 119 / 3e-32 EHB1 ENHANCED BENDING 1, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G70790 117 / 1e-31 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT1G70810 116 / 2e-31 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT5G47710 115 / 4e-31 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT5G37740 115 / 6e-31 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT1G48590 114 / 1e-30 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) AT3G17980 113 / 5e-30 AtC2 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038539 [exp] 631 / 0 AT4G21160 491 / 4e-176 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) Lus10039538 [exp] 308 / 1e-100 AT3G07940 490 / 4e-171 Calcium-dependent ARF-type GTPase activating protein family (.1) Lus10024165 [exp] 308 / 1e-100 AT3G07940 491 / 1e-171 Calcium-dependent ARF-type GTPase activating protein family (.1) Lus10016347 [exp] 310 / 2e-99 AT3G07940 478 / 8e-164 Calcium-dependent ARF-type GTPase activating protein family (.1) Lus10002760 [exp] 301 / 1e-95 AT3G07940 480 / 2e-164 Calcium-dependent ARF-type GTPase activating protein family (.1) Lus10038745 [exp] 126 / 5e-35 AT5G47710 241 / 1e-82 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10039113 [exp] 125 / 1e-34 AT5G47710 239 / 6e-82 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10009684 [exp] 120 / 5e-32 AT3G17980 254 / 1e-86 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10009053 [exp] 120 / 1e-31 AT3G17980 255 / 1e-86 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G098500 [exp] 456 / 3e-162 AT4G21160 506 / 0.0 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) Potri.001G372000 [exp] 455 / 8e-162 AT4G21160 506 / 0.0 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) Potri.T125706 [exp] 311 / 4e-103 AT3G07940 503 / 8e-178 Calcium-dependent ARF-type GTPase activating protein family (.1) Potri.003G198301 [exp] 311 / 4e-103 AT3G07940 503 / 7e-178 Calcium-dependent ARF-type GTPase activating protein family (.1) Potri.001G026400 [exp] 155 / 7e-45 AT3G07940 211 / 4e-66 Calcium-dependent ARF-type GTPase activating protein family (.1) Potri.008G131500 [exp] 129 / 3e-36 AT3G17980 202 / 5e-67 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.006G004600 [exp] 123 / 5e-34 AT5G47710 270 / 3e-94 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.012G047100 [exp] 123 / 5e-34 AT3G17980 251 / 2e-86 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.016G005300 [exp] 121 / 4e-33 AT5G47710 264 / 1e-91 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.004G089500 [exp] 112 / 5e-30 AT3G17980 245 / 4e-84 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain CL0154 [flax] [poplar] PF01412 [flax] [poplar] ArfGap Putative GTPase activating protein for Arf
Representative CDS sequence Show only first row Show all	>Lus10023265 pacid=23180927 polypeptide=Lus10023265 locus=Lus10023265.g ID=Lus10023265.BGIv1.0 annot-version=v1.0 ATGGTGCTGATTAACTGTGTTTACGTACCAGACGCAGGCTTTGTTGGATCAGCTTTGGTTATCAGCAAAGCAATGAGCCGTTTTTCAGATCTTCAGAAAA ATCCTTCAGCTAGAAGAAAATTAAGAGATTTGCTGCAACAAAGTGATAACCGAAATTGTGCAGATTGCGGAGCTCCTGATCCCAAATGGGCGTCCGCAAA CATTGGAGTCTTCCTATGCTTAAAATGCTGTAGTGTGCACAGAAGCCTTGGTAGCTCAAAGGTTTTGTCAGTGACATTGGATGACTGGGCCGAAGAAGAG ATCGACTCCATGATTGAAGTTGGAGGGAACGCAGCTGTCAATTCAATTTACGAGGCTCATATACCTGACGGGGTTTCGAAGCCCAAACCAGACGCCAATC ATGATGAGCGCGCAAAATTCATCAGATCAAAGTATGAGCTCCAAGAATTTTTGAAGGCCAGTTTGCGGATTACGTCAGGAAAGTCTGCTTCTGTCCAGCT AAGCTTCTCAAGTAGGATTGTGGATACATTCTGTAGCACAAGTACTTCAACGGATGGCATGGCAGAATTCATTGGTTTATTGAAGGCCAAGGTGGTAAAG GGAACAAATTTGGCTGTCAGAGATATGATGTCTAGTGATCCTTACGTCGTCCTAAGTCTCGGTAATCAGACCGTCCAGACAACTGCAGTATCGAGCAACC TGAATCCGATATGGAACGAGGAACTCATGCTCTCAATTCCCCAAGAGTTCGGTATCGTAAAGTTGCAAGTGTACGACTACGACACGTTCTCAGCGGATGA CATAATGGGGGAGGCGGACATAGACCTGCACCCGTTGATAAACTCGGCCATGGCGTACGGAGACCCGGAGATGTTTGGGAACATGCAGATAGGGAAGTGG TTGAAGTCAGACGACAACGCGCTGATAGAGGATAGCACGATAAACATAGAGGACGGGAAGGTGAAGCAGCAAGTGTTTCTGAAGCTACAGAACGTCGAAT CTGGGGAGTTAGAACTAGAGTTAGAGTGGCTGTCTCTGGAGCAATGA
AA sequence Show only first row Show all	>Lus10023265 pacid=23180927 polypeptide=Lus10023265 locus=Lus10023265.g ID=Lus10023265.BGIv1.0 annot-version=v1.0 MVLINCVYVPDAGFVGSALVISKAMSRFSDLQKNPSARRKLRDLLQQSDNRNCADCGAPDPKWASANIGVFLCLKCCSVHRSLGSSKVLSVTLDDWAEEE IDSMIEVGGNAAVNSIYEAHIPDGVSKPKPDANHDERAKFIRSKYELQEFLKASLRITSGKSASVQLSFSSRIVDTFCSTSTSTDGMAEFIGLLKAKVVK GTNLAVRDMMSSDPYVVLSLGNQTVQTTAVSSNLNPIWNEELMLSIPQEFGIVKLQVYDYDTFSADDIMGEADIDLHPLINSAMAYGDPEMFGNMQIGKW LKSDDNALIEDSTINIEDGKVKQQVFLKLQNVESGELELELEWLSLEQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21160		ZAC, AGD12	ARF-GAP domain 12, Calcium-dep...		Lus10023265 [exp]	0	1
AT5G56350			Pyruvate kinase family protein...		Lus10013396 [exp]	1.4	0.9086
AT2G01600			ENTH/ANTH/VHS superfamily prot...		Lus10007933 [exp]	6.2	0.8666
AT4G12070			unknown protein		Lus10031828 [exp]	9.5	0.8838
AT2G40890		REF8, CYP98A3, ...	cytochrome P450, family 98, su...		Lus10020847 [exp]	15.4	0.8768
AT4G12070			unknown protein		Lus10031257 [exp]	19.0	0.8755
AT3G09520		ATEXO70H4	exocyst subunit exo70 family p...		Lus10025291 [exp]	23.5	0.8990
AT3G18950			Transducin/WD40 repeat-like su...		Lus10012036 [exp]	28.4	0.8686
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10008187 [exp]	32.0	0.8871
AT2G22250		ATAAT, AAT, MEE...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10032388 [exp]	34.3	0.8635
AT4G17260			Lactate/malate dehydrogenase f...		Lus10004350 [exp]	42.2	0.8741

Compare expression of checked genes

Lus10023265 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.