Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05390 559 / 0 ATRFNR1 root FNR 1 (.1.2) AT1G30510 533 / 0 ATRFNR2 root FNR 2 (.1.2.3) AT1G20020 235 / 1e-74 ATLFNR2 ferredoxin-NADP\(+\)-oxidoreductase 2, LEAF FNR 2, ferredoxin-NADP(+)-oxidoreductase 2 (.1), ferredoxin-NADP(+)-oxidoreductase 2 (.2), ferredoxin-NADP(+)-oxidoreductase 2 (.3) AT5G66190 230 / 8e-73 ATLFNR1 ferredoxin-NADP\(+\)-oxidoreductase 1, LEAF FNR 1, ferredoxin-NADP(+)-oxidoreductase 1 (.1), ferredoxin-NADP(+)-oxidoreductase 1 (.2) AT4G30210 65 / 3e-11 AR2, ATR2 P450 reductase 2 (.1.2) AT3G02280 56 / 3e-08 Flavodoxin family protein (.1) AT4G24520 55 / 6e-08 AR1, ATR1 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038538 [exp] 668 / 0 AT4G05390 624 / 0.0 root FNR 1 (.1.2) Lus10028451 [exp] 233 / 9e-74 AT5G66190 596 / 0.0 ferredoxin-NADP\(+\)-oxidoreductase 1, LEAF FNR 1, ferredoxin-NADP(+)-oxidoreductase 1 (.1), ferredoxin-NADP(+)-oxidoreductase 1 (.2) Lus10041904 [exp] 226 / 3e-71 AT5G66190 595 / 0.0 ferredoxin-NADP\(+\)-oxidoreductase 1, LEAF FNR 1, ferredoxin-NADP(+)-oxidoreductase 1 (.1), ferredoxin-NADP(+)-oxidoreductase 1 (.2) Lus10025485 [exp] 66 / 9e-12 AT4G30210 681 / 0.0 P450 reductase 2 (.1.2) Lus10015525 [exp] 66 / 1e-11 AT4G30210 1009 / 0.0 P450 reductase 2 (.1.2) Lus10019996 [exp] 66 / 2e-11 AT4G30210 1013 / 0.0 P450 reductase 2 (.1.2) Lus10006972 [exp] 61 / 7e-10 AT4G30210 983 / 0.0 P450 reductase 2 (.1.2) Lus10017589 [exp] 56 / 4e-08 AT3G02280 810 / 0.0 Flavodoxin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G371900 [exp] 544 / 0 AT4G05390 635 / 0.0 root FNR 1 (.1.2) Potri.005G112900 [exp] 226 / 2e-71 AT5G66190 576 / 0.0 ferredoxin-NADP\(+\)-oxidoreductase 1, LEAF FNR 1, ferredoxin-NADP(+)-oxidoreductase 1 (.1), ferredoxin-NADP(+)-oxidoreductase 1 (.2) Potri.007G057200 [exp] 224 / 1e-70 AT5G66190 592 / 0.0 ferredoxin-NADP\(+\)-oxidoreductase 1, LEAF FNR 1, ferredoxin-NADP(+)-oxidoreductase 1 (.1), ferredoxin-NADP(+)-oxidoreductase 1 (.2) Potri.006G167200 [exp] 62 / 2e-10 AT4G30210 965 / 0.0 P450 reductase 2 (.1.2) Potri.002G106566 [exp] 61 / 3e-10 AT4G24520 459 / 2e-159 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) Potri.005G153800 [exp] 61 / 6e-10 AT4G24520 974 / 0.0 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) Potri.018G092100 [exp] 57 / 9e-09 AT4G30210 984 / 0.0 P450 reductase 2 (.1.2) Potri.004G101100 [exp] 56 / 2e-08 AT3G02280 811 / 0.0 Flavodoxin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0091 [flax] [poplar] NAD_Ferredoxin PF00175 [flax] [poplar] NAD_binding_1 Oxidoreductase NAD-binding domain
Representative CDS sequence Show only first row Show all	>Lus10023266 pacid=23181094 polypeptide=Lus10023266 locus=Lus10023266.g ID=Lus10023266.BGIv1.0 annot-version=v1.0 ATGGCTCACTCTGCGGCGGCTTCTCAGATTGCAGCAGCGATTGTTCCTGCTAGGAGCGACTCAGGTCTCAGAAGATCAGTTCTTAAGACACAAAGTATCA GCTTCAGTGACAGATCATGGACTCCTGCTCTGTCGTTGGACGTGAAATCGAGATATGGTCGGTTTCAAAGTCGGAACATAGTGTGCATGTCTGTGCAACA GGCCACCAGCAAATCCAAGGTTGAGGTTGCACCTTTAGAACTTGAGGGTGCCAAAGATCCACCTCTAAACATTTACAAGCCTAAGGAGCCTTACACGGCC ACCATTGTCTCTGTCGAGAGGCTTGTAGGTCCTAAAGCTCCTGGAGAGACCTGCCATGTCTTGATTGATCATGGGGGCAATGTTCCTTACTGGGAAGGAC AAAGTTATGGTGTGATCCCACCAGGTGAAAATCCGAAGAAGCCTGGCGCTCCCAATAATGTCCGGCTGTATTCGATTGCATCGACTAGGTACGGAGACAA TTTCGATGGCAGGACTGCCAGCTTATGTGTTCGTCGTGCTGTCTACTATGATCCCGAGACCGGGAAGGAGGATCCTGCAAAGGCTGGCGCTGGTCAGCCG GAGCCCACCCAAAAAGCCACTCACATTATGATCGCAACTGGCACGGGAGTTGCCCCCTACAGGGGTTACCTCCGACGAATGTTCATGGAGTCCGTCCCTA CATTCAAGTTCCAAGGCTTGGCGTGGCTTTTCCTCGGGGTGGCCAACACCGACAGTCTCTTGTACGACGAGGAGTTCACCAAGTATCGCCAGCAGTATCC GGATAACTTCCGGTATGACAAGGCCCTCAGCAGGGAGGAGAAGAACAAGAATGGAGGCAAGATGTACGTCCAGGACAAGATAGAGGAGTACAGCGACGAG ATATTCAAGATGCTGGACGAGGGAGCTCACATCTACTTCTGCGGGCTGAAAGGGATGATGCCTGGGATTCAAGACACTCTGAAGAGAGTTGCGGAAGGGA GAGGAGAAAGCTGGGAGGCGAAGCTGTCTCAGCTGAAGAAGAACAAGCAGTGGCATGTGGAAGTCTACTGA
AA sequence Show only first row Show all	>Lus10023266 pacid=23181094 polypeptide=Lus10023266 locus=Lus10023266.g ID=Lus10023266.BGIv1.0 annot-version=v1.0 MAHSAAASQIAAAIVPARSDSGLRRSVLKTQSISFSDRSWTPALSLDVKSRYGRFQSRNIVCMSVQQATSKSKVEVAPLELEGAKDPPLNIYKPKEPYTA TIVSVERLVGPKAPGETCHVLIDHGGNVPYWEGQSYGVIPPGENPKKPGAPNNVRLYSIASTRYGDNFDGRTASLCVRRAVYYDPETGKEDPAKAGAGQP EPTQKATHIMIATGTGVAPYRGYLRRMFMESVPTFKFQGLAWLFLGVANTDSLLYDEEFTKYRQQYPDNFRYDKALSREEKNKNGGKMYVQDKIEEYSDE IFKMLDEGAHIYFCGLKGMMPGIQDTLKRVAEGRGESWEAKLSQLKKNKQWHVEVY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G05390		ATRFNR1	root FNR 1 (.1.2)		Lus10023266 [exp]	0	1
AT1G65930		cICDH	cytosolic NADP+-dependent isoc...		Lus10020798 [exp]	1.0	0.9686
AT3G63010		ATGID1B, GID1B	GA INSENSITIVE DWARF1B, alpha/...		Lus10008189 [exp]	1.7	0.9672
AT5G15320			unknown protein		Lus10018064 [exp]	2.2	0.9664
AT1G09740			Adenine nucleotide alpha hydro...		Lus10015896 [exp]	3.0	0.9631
AT3G62150		ABCB21, PGP21	ATP-binding cassette B21, P-gl...		Lus10000052 [exp]	3.5	0.9684
AT1G11320			unknown protein		Lus10013574 [exp]	3.7	0.9645
AT3G19080			SWIB complex BAF60b domain-con...		Lus10009333 [exp]	4.0	0.9638
AT5G59613			unknown protein		Lus10005899 [exp]	6.8	0.9500
AT1G03910			unknown protein		Lus10021530 [exp]	6.9	0.9577
AT3G21630		LYSMRLK1, CERK1	LYSM DOMAIN RECEPTOR-LIKE KINA...		Lus10030022 [exp]	6.9	0.9665

Compare expression of checked genes

Lus10023266 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.