Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37990 466 / 1e-165 CAD-B2, ATCAD8, ELI3-2 CINNAMYL-ALCOHOL DEHYDROGENASE B2, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, elicitor-activated gene 3-2 (.1) AT4G37980 462 / 4e-164 ELI3-1, ATCAD7 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) AT4G39330 452 / 7e-160 AtCAD1, ATCAD9 cinnamyl alcohol dehydrogenase 9 (.1.2) AT4G37970 447 / 4e-158 ATCAD6 cinnamyl alcohol dehydrogenase 6 (.1) AT2G21730 446 / 2e-157 CAD2, ATCAD2 cinnamyl alcohol dehydrogenase homolog 2 (.1) AT2G21890 439 / 1e-154 CAD3, ATCAD3 cinnamyl alcohol dehydrogenase homolog 3 (.1) AT3G19450 307 / 1e-102 CAD-C, ATCAD4 CINNAMYL ALCOHOL DEHYDROGENASE 4, GroES-like zinc-binding alcohol dehydrogenase family protein (.1) AT1G72680 301 / 1e-100 ATCAD1 CINNAMYL ALCOHOL DEHYDROGENASE 1, cinnamyl-alcohol dehydrogenase (.1) AT4G34230 289 / 9e-96 CAD-5, ATCAD5, CAD-D, CAD6 cinnamyl alcohol dehydrogenase 5 (.1.2) AT5G63620 77 / 2e-15 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035956 [exp] 531 / 0 AT4G37990 509 / 0.0 CINNAMYL-ALCOHOL DEHYDROGENASE B2, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, elicitor-activated gene 3-2 (.1) Lus10025706 [exp] 526 / 0 AT4G37990 509 / 0.0 CINNAMYL-ALCOHOL DEHYDROGENASE B2, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, elicitor-activated gene 3-2 (.1) Lus10038536 [exp] 506 / 0 AT4G37990 341 / 6e-117 CINNAMYL-ALCOHOL DEHYDROGENASE B2, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, elicitor-activated gene 3-2 (.1) Lus10002089 [exp] 440 / 4e-155 AT4G39330 577 / 0.0 cinnamyl alcohol dehydrogenase 9 (.1.2) Lus10005611 [exp] 371 / 5e-128 AT4G39330 409 / 9e-143 cinnamyl alcohol dehydrogenase 9 (.1.2) Lus10017285 [exp] 370 / 1e-127 AT4G39330 413 / 1e-144 cinnamyl alcohol dehydrogenase 9 (.1.2) Lus10003854 [exp] 361 / 1e-124 AT4G39330 486 / 2e-174 cinnamyl alcohol dehydrogenase 9 (.1.2) Lus10000143 [exp] 352 / 3e-121 AT4G39330 463 / 3e-165 cinnamyl alcohol dehydrogenase 9 (.1.2) Lus10014104 [exp] 347 / 2e-118 AT3G19450 530 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 4, GroES-like zinc-binding alcohol dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G065300 [exp] 519 / 0 AT4G37990 492 / 1e-175 CINNAMYL-ALCOHOL DEHYDROGENASE B2, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, elicitor-activated gene 3-2 (.1) Potri.006G199100 [exp] 516 / 0 AT4G37980 506 / 0.0 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) Potri.001G268600 [exp] 514 / 0 AT4G37980 480 / 7e-171 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) Potri.009G063400 [exp] 509 / 0 AT4G37980 490 / 1e-174 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) Potri.016G078300 [exp] 493 / 6e-176 AT4G37970 482 / 2e-171 cinnamyl alcohol dehydrogenase 6 (.1) Potri.001G307200 [exp] 473 / 3e-168 AT4G39330 572 / 0.0 cinnamyl alcohol dehydrogenase 9 (.1.2) Potri.001G372400 [exp] 433 / 5e-152 AT4G39330 439 / 2e-154 cinnamyl alcohol dehydrogenase 9 (.1.2) Potri.002G018300 [exp] 372 / 2e-128 AT4G39330 409 / 5e-143 cinnamyl alcohol dehydrogenase 9 (.1.2) Potri.009G063300 [exp] 342 / 2e-118 AT4G37990 283 / 2e-95 CINNAMYL-ALCOHOL DEHYDROGENASE B2, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, elicitor-activated gene 3-2 (.1) Potri.003G196700 [exp] 318 / 2e-107 AT1G72680 469 / 1e-166 CINNAMYL ALCOHOL DEHYDROGENASE 1, cinnamyl-alcohol dehydrogenase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0296 [flax] [poplar] GroES PF08240 [flax] [poplar] ADH_N Alcohol dehydrogenase GroES-like domain CL0063 [flax] [poplar] NADP_Rossmann PF00107 [flax] [poplar] ADH_zinc_N Zinc-binding dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10023268 pacid=23180963 polypeptide=Lus10023268 locus=Lus10023268.g ID=Lus10023268.BGIv1.0 annot-version=v1.0 ATGGGTGGAGAAGAAGAAGCAGAGCAAGTTCAAGCATTTGGATGGGCTGCCACCGACCCCTCCGGTGTCCTTTCTCCCTTCCACTTCTCTCGGAGGGCTA CGGGGGAGAAGGACGTGCAATTCAAAGTGCTCTACTGCGGAATCTGTCACTCGGATCTCCACATGCTGAAAAACGAATGGGGGACGTCGATCTACCCGCT CGTCCCGGGCCACGAGATCGTCGGCCTAGTAACTCAAGTCGGGAACAATGTCGAGAAATTCAAAGTCGGGGACCGGGTGGGCGTCGGTTGCATGGTCGGA TCATGCCGCAACTGCTACAACTGCTCCAACGACCTCGAGAACTACTGCCCCGATTTCGTCCTAACATACTCCGCGCCCGCTAACCTCGTCCCCACGACGA CCTACGGAGGCTACTCCGACACCATGGTCTGCGACGAGCACTTTGTGGTCCGAATCCCGGACACCATCCCTATGGACGCGGCCGCTCCTTTGCTATGCGC CGGGATTACTGTTTACAGCCCGATCAGGTACTACGGGCTGGACAAGGCGGGGATGGAGGTGGGTGTGGTCGGCTTGGGCGGGTTGGGACACGTGGCGGTC AAGTTCTTGAAAGCAATGGGGGTTAGAGTGACAGTGGTCAGTACTTCTCATGGGAAGAAAGCTGAAGCCATGGAGAGGTTAGGTGCCGACTCGTTCTTGG TTAGTAAAGATGCGGAGGAGATGAATGCGGCGGTTGGAAAGTTGGATGGAATTATTAATACGGTTTCCGCAAGTCACTCTTTGTTGCCTTTGATCGGGCT GTTGAAGACTAACGGCAAGCTGATCTTGGTGGGTGCTCCGGAGAAACCCCACGAGTTGCCCGCTTTTCCTTTGTTGATGGGAAGGAAAATAGTAGGAGGA AGTGTGATAGGAGGGATGAAGGAGACGCAAGAGATGATTGATTTTGCAGCAAAACACAACGTCACTGCGGACATCGAAGTCGTTCCAATGGACTACGTGA ATACCGCTGTGGAACGACTTGCAAAGGCCGATGTCAAGTACAGATTCGTCCTCGATGTCGCCAACACTATTTAA
AA sequence Show only first row Show all	>Lus10023268 pacid=23180963 polypeptide=Lus10023268 locus=Lus10023268.g ID=Lus10023268.BGIv1.0 annot-version=v1.0 MGGEEEAEQVQAFGWAATDPSGVLSPFHFSRRATGEKDVQFKVLYCGICHSDLHMLKNEWGTSIYPLVPGHEIVGLVTQVGNNVEKFKVGDRVGVGCMVG SCRNCYNCSNDLENYCPDFVLTYSAPANLVPTTTYGGYSDTMVCDEHFVVRIPDTIPMDAAAPLLCAGITVYSPIRYYGLDKAGMEVGVVGLGGLGHVAV KFLKAMGVRVTVVSTSHGKKAEAMERLGADSFLVSKDAEEMNAAVGKLDGIINTVSASHSLLPLIGLLKTNGKLILVGAPEKPHELPAFPLLMGRKIVGG SVIGGMKETQEMIDFAAKHNVTADIEVVPMDYVNTAVERLAKADVKYRFVLDVANTI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37980		ELI3-1, ATCAD7	CINNAMYL-ALCOHOL DEHYDROGENASE...		Lus10023268 [exp]	0	1
AT5G45290			RING/U-box superfamily protein...		Lus10016428 [exp]	1.0	0.9824
AT2G36780			UDP-Glycosyltransferase superf...		Lus10012011 [exp]	1.4	0.9738
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10032347 [exp]	2.4	0.9700
AT5G42785			unknown protein		Lus10002541 [exp]	3.3	0.9513
AT1G16310			Cation efflux family protein (...		Lus10009598 [exp]	4.0	0.9659
AT2G36890	MYB	BIT1, ATMYB38, ...	REGULATOR OF AXILLARY MERISTEM...		Lus10023002 [exp]	4.2	0.9578
AT2G40200	bHLH	bHLH051	basic helix-loop-helix (bHLH) ...		Lus10013917 [exp]	4.6	0.9572
AT5G65980			Auxin efflux carrier family pr...		Lus10012708 [exp]	4.9	0.9570
AT1G14190			Glucose-methanol-choline (GMC)...		Lus10032346 [exp]	6.2	0.9496
AT4G15550		IAGLU	indole-3-acetate beta-D-glucos...		Lus10015515 [exp]	6.2	0.9276

Compare expression of checked genes

Lus10023268 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.