Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51980 374 / 1e-127 ARM repeat superfamily protein (.1) AT5G02150 81 / 8e-17 Fes1C Fes1C (.1.2) AT3G09350 76 / 4e-15 Fes1A Fes1A (.1.2.3) AT3G53800 63 / 1e-10 Fes1B Fes1B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038535 [exp] 692 / 0 AT3G51980 404 / 1e-139 ARM repeat superfamily protein (.1) Lus10003961 [exp] 66 / 1e-11 AT3G09350 523 / 0.0 Fes1A (.1.2.3) Lus10023786 [exp] 66 / 2e-11 AT3G09350 522 / 0.0 Fes1A (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G072200 [exp] 462 / 2e-162 AT3G51980 414 / 5e-144 ARM repeat superfamily protein (.1) Potri.003G158701 [exp] 286 / 3e-95 AT3G51980 251 / 3e-82 ARM repeat superfamily protein (.1) Potri.016G100500 [exp] 76 / 7e-15 AT3G09350 472 / 3e-167 Fes1A (.1.2.3) Potri.006G088000 [exp] 72 / 1e-13 AT3G09350 516 / 0.0 Fes1A (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08609 [flax] [poplar] Fes1 Nucleotide exchange factor Fes1
Representative CDS sequence Show only first row Show all	>Lus10023269 pacid=23181068 polypeptide=Lus10023269 locus=Lus10023269.g ID=Lus10023269.BGIv1.0 annot-version=v1.0 ATGGTCCGTCAAAGCTCGGTGCTTTTTAACAATGGCGCTCTTGGTGGCGGGATATTGGCGCTTTTGGCGGTCACGTTGATCTTGACTGTGTCTGGCGTAG CTGGAGACAAACAATTAAACGAGACATCTTCTGCATCGAGTTTAGTTTGGACGGCAGCAGATGAAGAGTCTAGTGATAACTTGATGCTCAATGCTGAACC AGTCAACGAATCCTCCTCTCTGGCAGCATCTGTTGTGGGCGACCAAGATGAACTTGATGGTGGCTTTTCTTCTCTTGAAGGGATGCTGCAGTGGGCTATA GGTCATTCTGACCCTGATGCATTGAAGCAATCTGCACAAGATGCTCAGCGTTTGTCTGCTGCAGAGCTTAAGAAGCGCCAAATGGAAATTAAGGAACTGA TGGAGAAGATGAAAATGCCTTCTGATGCGCAGCTGATGCAGACTGCCTTAAATGATTTGAATAATTCCTCTGTACCTACGGAAGATCGTCTCCGTGCCCT AGAGGAGCTTCTTATTCTTGTTGAGCCGATTGATAATGCCAATGATTTAAACAAACTTGGCGGACTTGCGCTGGTGATTCGAGAGCTTAATCATCCTGAA CCTGAAATCAGGACGTTATCTGCATGGGTCCTTGGCAAGGCTAGTCAAAATAACGCAGTTGTACAGAAACAGGTTTTGGAACTTGGGGCACTGTCAATTC TAATGAAGATGGTGTCATCTGATTCTTCGGAAGAAGCAATCAAAGCGCTCTATGCTGTGTCAGCATTGATTCGTAACAACCTTGTCGGTCAAGACTTGTT CTATTTCGAAGCTGGAGATAAGCTACTTTTGGATATGCTGCGCAACTCGAGTTCTAATATCAGACTCTGCAAGAAGGCAGTCTCTCTCGTTTCCGATCTA GCTGAAAATGAATTGGAATATCCAGACAGAGCAGAGCATCCTTGTTTCGGCAATCATCTGTTCTTGAAGTCCGTTGTTAATTTGACACTGTCAGTCGACG TTGATCTCCAAGAAAAGGCTCTTCTAGCAATCAAGAACCTCCTGCAGCTAGAAACTGCAAATGCAGTCATTTTTAAGGACTTCTGTGGATTGGACGCTGC TTTGGAGAGAATGAGACAGCACCTGCTCAATATAACGTTGGAGGATTCAGATGGTGACTTTGCAGTTAATTTGGAGACACTGATCGGAGAAGTACAATCA ACATTCCACAGAAAGCTTGGAGAAGAGATGAGAGTTGGCCAATGA
AA sequence Show only first row Show all	>Lus10023269 pacid=23181068 polypeptide=Lus10023269 locus=Lus10023269.g ID=Lus10023269.BGIv1.0 annot-version=v1.0 MVRQSSVLFNNGALGGGILALLAVTLILTVSGVAGDKQLNETSSASSLVWTAADEESSDNLMLNAEPVNESSSLAASVVGDQDELDGGFSSLEGMLQWAI GHSDPDALKQSAQDAQRLSAAELKKRQMEIKELMEKMKMPSDAQLMQTALNDLNNSSVPTEDRLRALEELLILVEPIDNANDLNKLGGLALVIRELNHPE PEIRTLSAWVLGKASQNNAVVQKQVLELGALSILMKMVSSDSSEEAIKALYAVSALIRNNLVGQDLFYFEAGDKLLLDMLRNSSSNIRLCKKAVSLVSDL AENELEYPDRAEHPCFGNHLFLKSVVNLTLSVDVDLQEKALLAIKNLLQLETANAVIFKDFCGLDAALERMRQHLLNITLEDSDGDFAVNLETLIGEVQS TFHRKLGEEMRVGQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51980			ARM repeat superfamily protein...		Lus10023269 [exp]	0	1
AT1G13580		LOH3, LAG13	LAG One Homologue 3, LAG1 long...		Lus10030571 [exp]	2.4	0.9379
AT4G28560		RIC7	ROP-interactive CRIB motif-con...		Lus10008242 [exp]	3.5	0.9231
AT1G49350			pfkB-like carbohydrate kinase ...		Lus10010290 [exp]	8.1	0.9226
AT2G13650		GONST1	golgi nucleotide sugar transpo...		Lus10024126 [exp]	11.1	0.8954
AT1G34540		CYP94D1	"cytochrome P450, family 94, s...		Lus10041637 [exp]	12.0	0.9252
AT2G45240		MAP1A	methionine aminopeptidase 1A (...		Lus10021657 [exp]	15.3	0.9017
AT1G09300			Metallopeptidase M24 family pr...		Lus10010905 [exp]	15.7	0.8820
AT5G11310			Pentatricopeptide repeat (PPR)...		Lus10013139 [exp]	19.4	0.8817
AT4G09890			Protein of unknown function (D...		Lus10020842 [exp]	20.1	0.9035
AT4G17616			Pentatricopeptide repeat (PPR)...		Lus10035686 [exp]	20.3	0.8693

Compare expression of checked genes

Lus10023269 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.