Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34680 1302 / 0 AIR9 AUXIN-INDUCED IN ROOT CULTURES 9, Outer arm dynein light chain 1 protein (.1) AT5G22320 47 / 0.0001 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) AT5G19680 45 / 0.0004 Leucine-rich repeat (LRR) family protein (.1) AT2G33020 44 / 0.0009 AtRLP24 receptor like protein 24 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038534 [exp] 1589 / 0 AT2G34680 1378 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 9, Outer arm dynein light chain 1 protein (.1) Lus10013308 [exp] 52 / 2e-06 AT5G22320 362 / 9e-122 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Lus10029154 [exp] 49 / 2e-06 AT5G23510 95 / 6e-25 unknown protein Lus10005198 [exp] 52 / 3e-06 AT5G22320 318 / 9e-105 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Lus10016324 [exp] 47 / 0.0001 AT4G20140 268 / 9e-78 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10002742 [exp] 46 / 0.0003 AT1G58190 399 / 6e-124 receptor like protein 9 (.1.2) Lus10034258 [exp] 44 / 0.0004 AT5G58300 201 / 2e-61 Leucine-rich repeat protein kinase family protein (.1.2) Lus10010891 [exp] 44 / 0.0004 AT5G19680 384 / 3e-135 Leucine-rich repeat (LRR) family protein (.1) Lus10000228 [exp] 45 / 0.0005 AT3G05370 231 / 3e-66 receptor like protein 31 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G357700 [exp] 1449 / 0 AT2G34680 2236 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 9, Outer arm dynein light chain 1 protein (.1) Potri.011G090200 [exp] 1353 / 0 AT2G34680 1307 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 9, Outer arm dynein light chain 1 protein (.1) Potri.011G090150 [exp] 778 / 0 AT2G34680 840 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 9, Outer arm dynein light chain 1 protein (.1) Potri.004G199200 [exp] 52 / 4e-06 AT5G22320 354 / 2e-118 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Potri.006G163900 [exp] 47 / 6e-05 AT5G19680 513 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.002G008175 [exp] 47 / 0.0002 AT4G08850 566 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.018G086200 [exp] 45 / 0.0003 AT5G19680 486 / 5e-174 Leucine-rich repeat (LRR) family protein (.1) Potri.002G008375 [exp] 46 / 0.0004 AT4G08850 557 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.002G008100 [exp] 45 / 0.0005 AT4G08850 565 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.018G118035 [exp] 45 / 0.0005 AT1G07390 465 / 1e-146 receptor like protein 1 (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023270 pacid=23180945 polypeptide=Lus10023270 locus=Lus10023270.g ID=Lus10023270.BGIv1.0 annot-version=v1.0 ATGGAGGAACCACCGCCTGTGGTATCATCCGGTGAAGACCCAGTTCAGATGCCGCCTGTGGAGGTTACTGTAAGTCCTAATGAGACAACCAAGAAGGTTG TAAAAAGACCCACCAAGCCTATCATTTCTCGGACCTCAACACTGTTGGCACCTAAAGGTTCAGCTAGAAAGAGGGCTGAATCCAAAGAAAGTCCGGATTC AAGCACAAATGCAGGGAAGCAAAGCACTATTGGTAATACTTCCTCCTCCTGTACTTCCACTGCAGTTCCAGCCATTAGACGGAACAGTACTGGTGGAGTG TCTGCTGAGAAACGTGGGCAGAATGGGGCTTCTGTTGTCAGTGCTGGGAAAAATAGTAGTGCTGTGGTGGACCCGGTAAGGAAGTCCCTTCCAGAGCTGA GAAGGAGTTCCTTACCTTCTGTGGCTGCAAAACCCACAAGAGGATCGAGTGTTTCAGGGATTAGGAAATCAGTTCACATGTCACCTTCGGAAAAGAGTCT GAGGACTTCAACTGCTTCTGATATCAGTATCCCGGGGACAGCCCGTAAGCCTTCAGTTAAGCCAACATTGTCGGCCTCTTCTTCTTCATCTTCTGTGAAG AGAGTTCCATCTACATCACTTGAGAGCAGTGCCAGTAGTGTGACTAGGAAGACAGTATCAAAAGTTTCATCGTCTTCGGCTCGTTCCCCGTCAGTTTCTA GTGGATTACGAAGTGGGTCATTGTCAACATCCTTGGATACGTGTTCTAGCTTGTCTGCAAGGAGGAGAGTGGGCACGCCTGAGAGTCGGGATTCTCGGTT CATTGCACTGCCACAAAATGAGCTTAAAGGTGGGGGGGGTGGGGGGGGTTTTCTGGGTCACAGAGTTCGCACCCTCAATGCTAATGGATTAAACTTGTCA GCCACTTTAGAGGTATTCTATTTCAGATACATCATAAATTATAGCTTATACTGTCTGCTGCTGAGAACTACTGCCAGTAATTCCTCTAACTACTATTTTG TTGATTTGAGTTTCAATGAGTTTAAGGGTCCTGGATTTGAGCCTCTTGAGAATTGTACTGCCTTACAGCAACTGTATCTTGCTGGAAATCAGATCACATC ACTTATGAGCCTTCCGCAGCTACCTAACTTGGAGTTCCTATCTGTTGCTCAAAACAAGCTGAAGTCACTTGCAATGTCAAGTCAACCTCGATTACAGGTT TTAGCTGCAAGCAAAAATAAAATATCAACTCTTAAGGGTTTCCCGTATCTTCCTGCCCTTGAGCATTTACGAGTTGAGGAAAATCCGATACTTAAGGTGC CCTATTTAGAAGCTGCTTCTATATTGCTTGTTGGTCCTACATTGAAAAAGTTCAATGATAGAGGTTTCACACGTGAGGCGATAACAATAGCCAAGCGGTA TCCAGCATGCACGGCTTTGTGTATTAGAGATGGCTGGGAATTTCGTCGTCCCGAGAATGTCTCAGAATCAATTTTTCACTTTCTTTTGGAGAAATGGAAG GACCACTTGCCTGCTGGTTATCTTTTAAAAGATGCCCGTGTTGATCAACCATTTGAAGATGACATCTGCAGATGCCACTTCAACTTTCACCAAGATGAAG TTCCAATCGATGAGCCACCATTAGTCTTGAAATATCAATGGTTTGTGGGGGAGAGACCACTTTCAGACTTAATTCCAATTGCTGATGCCAACAAAGAGGT GTACTGGCCAACACGTGATGACATCCGTAAATTTCTGAAAGTTGAGTGTATTCCTGTAATTGGAGAGACTGAGTATCCAGCTATATTTGCCATTTCACCC CCAGTTTCACGAGGAAATGGCATCCCGAAAGTAGTTAACCTTGAAGTGTGTGGGGAGTTGGTGGAAGGAAGTGTTATCAAGGGCCAGACAAAGGTTGCAT GGTGTGGTGGGACTCCTGGTAAAGGCGTTTCCAGTTGGCTTAGGAAAAAGTGGAACAGCAGCCCTGTGGTTATTGCTGGAGCAGAAGATGAAGAGTACCA GTTGACTCTAGATGATGTTGATTCAAGTCTTGTCTTTATGTATACACCAGTCACAGAGGAAGGTGCAAAAGGGGAACCTCAGTATAAGTACACGGATTTC GTTAAAGCAGCTCCTCCTTCAGTCAACAATGTCCAAATTGTTGGAGATGTGGTTGAAGGAAATATAATGAAAGGTGTTGGTGATTACTTTGGAGGAAAAG AGGGTCCTAGCAAGTTTGAATGGCTACGTGAGAACAAGGACACTGGGGAGTTTTTAGTAGTATCATCTGGTACATCGGAATATACTCTGACAAAGGGAGA TGTTGGTCACCGTGTCGCTTTTGTATATATCCCCACTAATTTTGAAGGACAAGAAGGAGAATCTATGTCAGTCATGACTCATGCAGTTAAGCGAGCTCCT CCGAAGGTATCAAATGTTAAGATAATTGGCGAATTAAGAGAAAACAGTAAGATTACTGTTACTGGCATTGTCACCGGAGGAACTGAAGGCTCTAGCAGGG TACAATGGTTCAGAATGACTTCTTCAACATTTGATGATGAGAATGGTCTTGAAGCACTGAGCACGTCCAAGATTGCCAAGGCATTTCGGATTCCTCTTGG AGCGGTTGGCTATTACATTGTTGCAAAATATACTCCGATGACTTCAGATGGGGAATCTGGTCAACCAGCATATGCAATGTCAGAAGCTATCATCGAAACC CTTCCTCCGAGCCTAAACTTCTTGTCTATAACTGGTGACTACACTGAAGGTGGAATATTGACCGCATCATATGGCTACGTGGGGGGTCATGAAGGGAAAA GTATATATAATTGGTATCTTCATGAGGTAGAAACAGACTCTGGTATCTTGATACCTGAGGGTTGTGGAGTCCTTCAATATCAGGTTAACAAAGATGCAAT TGGGAAATTTGTATCCTTCGAATGTGTCCCGGTGCGTGATGATGATATTGTAGGTGAACCTAGGAGTTGCATGGGCCAGGAACGTCTTCAACCAGGAAGC CCACGATTGCTCGCTCTGCAAATTGTTGGAAGTGCTGTTGAAGGAACTCAACTAAGTGTCAACAAAAAGTACTGGGGTGGTGAAGAGGGAGAATCAGTTT TTCGTTGGTTACGGATTGCATCAGATGGTACCCAATTTAAAATTCCTGGTGCCAGTGCTTCTTCATACACCATGGTGTTTGATGATATTGGTTACTATGT ATCTGTTTCATGCGAACCTGTCAGAAGCGATTGGGCACGTGGTCCTGTTGTCCTCTCTGAACAAGTTGGACCAATCGTACCTGGCCCTCCAACTTGCCAA TCCTTAGAGTTCCTTGGATCTATGATTGAGGGGCAGCGAGTCAGCTTCATAGCTACTTACACAGGAGGGGACAGGGGAAATTGCTGCCATGACTGGTTTA GGGTGAGAAGTAATGGTGTCAGGGAGAAACTTAGTGATGATGACTTTCTGGATTTGACGTTAGAAGATGTTGGAAAACATATCGAATTAATCTACTTTCC AATTCGCAAAGATGGTGCACGGGGAAGTCCTAAAACCATTAAGTCTAATATCGTTGTTCCCGCCTACACTCCCTCACTTGAAGATGTGGGATCTTTTTTG GCTTTATACTGGGTGCCCGTACGTGCTGATGGAAAACGTGGAAAGCCATTGGTTGCTATTTCAAGCTCTCCTGTTAACCCAGGGCTTCCGAGCGTTTCCG AGGTTCATGTCAAGGAGTTATCATCAGGTGCCTATTGTGGGGAAGGGGTATATTTTGGTGGGTATGAGGGGTCCAGCCAGTTTAGCTGGTATAGAGAAAC CAACGAGGGAAAAATGATCCTCATTGATGGAGCTAACTCTGTAACTTATGAAGTCACGGACTCTGATTACACTTGCCGTTTGTTATTTGGATACACCCCA GTTCGCTCAGATTCGGTTGTGGGAGAACTTGTGTTGTCAGCCCGAACTGACATTATCCTCCCTGAACTTCCAAGAGTCGAAATGCTCGCTCTCACTGGAA AGGCAATAGAAGGGGACATACTTACTGCGGTTGAGGTCATTCCAGAGAATTTGACTCAACAATCCGTTTGGAGCAAATACAAAAAGAATGTCAAATATCA ATGGTTCCGTTCCTCTGAGTCAGGGGAGAGCAACTGTTTTGAGCCTTTAACTACTCAGGTGTCATGCTCTTACAAGGTGCGATTGGAGGACATTGGTAGA TGGTTGAGATGCGAATGTATCATTTATGATGTCTTTGGAAGGTTAAGCGAACCAGCATATGCTGTGACTGAAGCTGTATTACCAGGAATTCCTAGAATGC ATAAGTTGGAGATCGAGGGAAGGGGTTACCACACTAACCTATATGCTGTTCGGGGTGTATATACTGGTGGAAAAGAAGGAAAAAGTAAAATCCAGTGGCT AAGATCAATGGTTGGGAGTCCTGATCTCATCTCCATCCAAGGAGAGGTAGGAAGGATGTACGAAGCTAATGTTGATGATGTAGGGTATAGGCTAGTGGCT ATTTATACCCCAATTAGGGAAGATGGCGTAGAGGGGCAACCTGTATCTGCATCAACCGAGCCGATTGCTGTTGAGCCTGATGTTTTAAGCGAAGTAAAAC AGAAACTTGACGTCGGGTCTGTGAAGTTTGAGGTATTATGCGACAAGGACCGTTCATCCAAGAAGTTTGCGGGGGAAGGAAGTCTGGAGAGAAGGGTTTT GGAGATCAACAGAAAGAGAGTGAAGGTTATGAAGCCTGGCTCCAAGACTTCATTTCCAGCTACCGAAATTCGTGGAACTTATACTCCTCCTTTCCATGTG GAGCTGTTCAGAAACGACCAACACCGGCTAAGAATCGTAGTGGACAGCGAGAACGTAGCAGACTTGATGGTGCACTCGCGGCACTTGAGGGACATAGTTG TTCTTGTGATCAGAGGGCTGGCTCAGAGATTCAACAGTACATCTCTCAATTCTCTCCTCAAGATAGACACGTGA
AA sequence Show only first row Show all	>Lus10023270 pacid=23180945 polypeptide=Lus10023270 locus=Lus10023270.g ID=Lus10023270.BGIv1.0 annot-version=v1.0 MEEPPPVVSSGEDPVQMPPVEVTVSPNETTKKVVKRPTKPIISRTSTLLAPKGSARKRAESKESPDSSTNAGKQSTIGNTSSSCTSTAVPAIRRNSTGGV SAEKRGQNGASVVSAGKNSSAVVDPVRKSLPELRRSSLPSVAAKPTRGSSVSGIRKSVHMSPSEKSLRTSTASDISIPGTARKPSVKPTLSASSSSSSVK RVPSTSLESSASSVTRKTVSKVSSSSARSPSVSSGLRSGSLSTSLDTCSSLSARRRVGTPESRDSRFIALPQNELKGGGGGGGFLGHRVRTLNANGLNLS ATLEVFYFRYIINYSLYCLLLRTTASNSSNYYFVDLSFNEFKGPGFEPLENCTALQQLYLAGNQITSLMSLPQLPNLEFLSVAQNKLKSLAMSSQPRLQV LAASKNKISTLKGFPYLPALEHLRVEENPILKVPYLEAASILLVGPTLKKFNDRGFTREAITIAKRYPACTALCIRDGWEFRRPENVSESIFHFLLEKWK DHLPAGYLLKDARVDQPFEDDICRCHFNFHQDEVPIDEPPLVLKYQWFVGERPLSDLIPIADANKEVYWPTRDDIRKFLKVECIPVIGETEYPAIFAISP PVSRGNGIPKVVNLEVCGELVEGSVIKGQTKVAWCGGTPGKGVSSWLRKKWNSSPVVIAGAEDEEYQLTLDDVDSSLVFMYTPVTEEGAKGEPQYKYTDF VKAAPPSVNNVQIVGDVVEGNIMKGVGDYFGGKEGPSKFEWLRENKDTGEFLVVSSGTSEYTLTKGDVGHRVAFVYIPTNFEGQEGESMSVMTHAVKRAP PKVSNVKIIGELRENSKITVTGIVTGGTEGSSRVQWFRMTSSTFDDENGLEALSTSKIAKAFRIPLGAVGYYIVAKYTPMTSDGESGQPAYAMSEAIIET LPPSLNFLSITGDYTEGGILTASYGYVGGHEGKSIYNWYLHEVETDSGILIPEGCGVLQYQVNKDAIGKFVSFECVPVRDDDIVGEPRSCMGQERLQPGS PRLLALQIVGSAVEGTQLSVNKKYWGGEEGESVFRWLRIASDGTQFKIPGASASSYTMVFDDIGYYVSVSCEPVRSDWARGPVVLSEQVGPIVPGPPTCQ SLEFLGSMIEGQRVSFIATYTGGDRGNCCHDWFRVRSNGVREKLSDDDFLDLTLEDVGKHIELIYFPIRKDGARGSPKTIKSNIVVPAYTPSLEDVGSFL ALYWVPVRADGKRGKPLVAISSSPVNPGLPSVSEVHVKELSSGAYCGEGVYFGGYEGSSQFSWYRETNEGKMILIDGANSVTYEVTDSDYTCRLLFGYTP VRSDSVVGELVLSARTDIILPELPRVEMLALTGKAIEGDILTAVEVIPENLTQQSVWSKYKKNVKYQWFRSSESGESNCFEPLTTQVSCSYKVRLEDIGR WLRCECIIYDVFGRLSEPAYAVTEAVLPGIPRMHKLEIEGRGYHTNLYAVRGVYTGGKEGKSKIQWLRSMVGSPDLISIQGEVGRMYEANVDDVGYRLVA IYTPIREDGVEGQPVSASTEPIAVEPDVLSEVKQKLDVGSVKFEVLCDKDRSSKKFAGEGSLERRVLEINRKRVKVMKPGSKTSFPATEIRGTYTPPFHV ELFRNDQHRLRIVVDSENVADLMVHSRHLRDIVVLVIRGLAQRFNSTSLNSLLKIDT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34680		AIR9	AUXIN-INDUCED IN ROOT CULTURES...		Lus10023270 [exp]	0	1
AT2G38040		CAC3	acetyl Co-enzyme a carboxylase...		Lus10017184 [exp]	2.6	0.8586
AT1G60860		AGD2	ARF-GAP domain 2 (.1)		Lus10030921 [exp]	3.6	0.8168
AT5G61960		AML1	MEI2-like protein 1 (.1.2)		Lus10043204 [exp]	6.9	0.8432
AT1G48410		AGO1	ARGONAUTE 1, Stabilizer of iro...		Lus10031331 [exp]	8.8	0.8326
AT5G37055		ATSWC6, SEF	SERRATED LEAVES AND EARLY FLOW...		Lus10026399 [exp]	10.3	0.7474
AT5G11560			catalytics (.1)		Lus10011690 [exp]	12.0	0.8513
AT1G30820			CTP synthase family protein (....		Lus10038403 [exp]	14.5	0.8128
AT4G10320			tRNA synthetase class I (I, L,...		Lus10041706 [exp]	19.3	0.8364
AT1G50710			unknown protein		Lus10032639 [exp]	20.5	0.8169
AT1G70300		KUP6	K+ uptake permease 6, K+ uptak...		Lus10012992 [exp]	26.5	0.7366

Compare expression of checked genes

Lus10023270 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.