Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19050 45 / 1e-05 NB-ARC domain-containing disease resistance protein (.1) AT5G45510 44 / 2e-05 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) AT5G22690 40 / 0.0008 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G45210 39 / 0.001 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038482 [exp] 89 / 1e-20 AT1G69550 386 / 3e-113 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10035674 [exp] 87 / 8e-20 AT5G36930 410 / 1e-121 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10001038 [exp] 82 / 1e-18 AT1G69550 112 / 2e-27 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10023487 [exp] 83 / 2e-18 AT5G36930 284 / 4e-78 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10037406 [exp] 80 / 2e-17 AT5G36930 395 / 5e-116 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10020237 [exp] 78 / 7e-17 AT1G69550 99 / 3e-21 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10038533 [exp] 77 / 2e-16 AT1G27170 386 / 7e-114 transmembrane receptors;ATP binding (.1.2) Lus10023272 [exp] 77 / 2e-16 AT5G36930 423 / 4e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10020238 [exp] 76 / 3e-16 AT1G69550 391 / 7e-117 disease resistance protein (TIR-NBS-LRR class) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G128000 [exp] 44 / 3e-05 AT3G14470 435 / 6e-135 NB-ARC domain-containing disease resistance protein (.1) Potri.017G127200 [exp] 44 / 4e-05 AT3G14470 404 / 4e-123 NB-ARC domain-containing disease resistance protein (.1) Potri.017G127800 [exp] 40 / 0.0008 AT3G14470 437 / 1e-135 NB-ARC domain-containing disease resistance protein (.1) Potri.005G030700 [exp] 40 / 0.0008 AT1G69550 602 / 0.0 disease resistance protein (TIR-NBS-LRR class) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10023273 pacid=23180997 polypeptide=Lus10023273 locus=Lus10023273.g ID=Lus10023273.BGIv1.0 annot-version=v1.0 ATGCATCTCGAGGGTCTCGAATTTCTAACGCTTCTCGAGAAATTATGTGTGGAAGATTGTTGCTTATTGGAACAGTTCCTCGATCTCTCCTGCCTCCGAA ACCTACGTGAACTATCCATTCATTTTTGCAAGCGGTTGTCAGAAGTGAAAGGGCTTGAGAGTCTGGAGTTTCTGGAATCGTTGAGCTTTGAACACTGCAC ATCGCTTCGAGAGTCTCTGGATGTGTCCGGTCTGAGAAGGCTAAAGAAGCTTACTCTCATTAAGTGCACGCTGTTGACTGAGGTGGCGGGGCTCGAGGAA TTGGTATCTCTACAAAAGCTTAAAATGCGTGACTGCACATCGATTAAGAAGTTGCCGAACGTATCTTATCTCAGGCATTTAATCGAGTTAGATATTTCTG GATGCATACAGTTGAGTCAAGTTGGTGGAATTGAGAGTCTGAAAAAGTTGGTCCTGTTGAGAACAGACGACGGATTAATCAATTCGCCGCTACAAGGACA TGCTGCACGGATTAAGAGGAAGATTGTTCGCTACCAAACTCCTGGGTATCTTGGGCCGTAA
AA sequence Show only first row Show all	>Lus10023273 pacid=23180997 polypeptide=Lus10023273 locus=Lus10023273.g ID=Lus10023273.BGIv1.0 annot-version=v1.0 MHLEGLEFLTLLEKLCVEDCCLLEQFLDLSCLRNLRELSIHFCKRLSEVKGLESLEFLESLSFEHCTSLRESLDVSGLRRLKKLTLIKCTLLTEVAGLEE LVSLQKLKMRDCTSIKKLPNVSYLRHLIELDISGCIQLSQVGGIESLKKLVLLRTDDGLINSPLQGHAARIKRKIVRYQTPGYLGP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G44670			Disease resistance protein (TI...		Lus10023273 [exp]	0	1
					Lus10019266 [exp]	5.8	0.6483
AT5G61990			Pentatricopeptide repeat (PPR)...		Lus10016725 [exp]	29.0	0.5255
AT1G03050			ENTH/ANTH/VHS superfamily prot...		Lus10000201 [exp]	31.5	0.5246
					Lus10042671 [exp]	36.1	0.5239
AT3G45890		RUS1	ROOT UVB SENSITIVE 1, Protein ...		Lus10001413 [exp]	52.3	0.5018
AT1G08710			F-box family protein (.1.2)		Lus10020340 [exp]	64.5	0.4748
AT1G68320	MYB	BW62C, BW62B, A...	myb domain protein 62 (.1)		Lus10041435 [exp]	82.0	0.4585
AT5G04350			Plant self-incompatibility pro...		Lus10029381 [exp]	86.5	0.4528
AT2G28480			RNA-binding CRS1 / YhbY (CRM) ...		Lus10034313 [exp]	87.7	0.4671
AT4G09990			Protein of unknown function (D...		Lus10007374 [exp]	95.0	0.4360

Compare expression of checked genes

Lus10023273 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.