Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30440 871 / 0 Phototropic-responsive NPH3 family protein (.1) AT5G03250 594 / 0 Phototropic-responsive NPH3 family protein (.1) AT5G13600 523 / 8e-180 Phototropic-responsive NPH3 family protein (.1) AT3G44820 514 / 2e-175 Phototropic-responsive NPH3 family protein (.1) AT5G66560 469 / 9e-158 Phototropic-responsive NPH3 family protein (.1) AT5G64330 419 / 4e-137 JK218, RPT3, NPH3 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) AT3G50840 411 / 2e-136 Phototropic-responsive NPH3 family protein (.1) AT5G48800 362 / 6e-117 Phototropic-responsive NPH3 family protein (.1) AT3G08570 325 / 1e-102 Phototropic-responsive NPH3 family protein (.1) AT4G37590 319 / 7e-101 MEL1, NPY5 NAKED PINS IN YUC MUTANTS 5, MAB4/ENP/NPY1-LIKE 1, Phototropic-responsive NPH3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038531 [exp] 1210 / 0 AT1G30440 915 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10040409 [exp] 561 / 0 AT5G03250 667 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10023523 [exp] 553 / 0 AT5G03250 667 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10013799 [exp] 548 / 0 AT5G03250 672 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10015871 [exp] 546 / 0 AT5G03250 666 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10009292 [exp] 539 / 0 AT5G03250 670 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10026511 [exp] 516 / 2e-176 AT5G03250 665 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10019522 [exp] 493 / 2e-167 AT3G44820 781 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10037432 [exp] 486 / 1e-164 AT5G66560 747 / 0.0 Phototropic-responsive NPH3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G091100 [exp] 950 / 0 AT1G30440 924 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.001G357100 [exp] 936 / 0 AT1G30440 971 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.008G038600 [exp] 610 / 0 AT5G03250 723 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.010G223600 [exp] 606 / 0 AT5G03250 683 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.016G090400 [exp] 601 / 0 AT5G03250 768 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.004G189800 [exp] 519 / 7e-178 AT3G44820 835 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.009G150500 [exp] 510 / 2e-174 AT3G44820 826 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.007G033900 [exp] 507 / 8e-173 AT5G66560 789 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.005G130700 [exp] 499 / 2e-169 AT5G66560 733 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.017G048200 [exp] 417 / 2e-137 AT5G64330 993 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [flax] [poplar] POZ PF00651 [flax] [poplar] BTB BTB/POZ domain CL0033 [flax] [poplar] PF03000 [flax] [poplar] NPH3 NPH3 family
Representative CDS sequence Show only first row Show all	>Lus10023274 pacid=23180965 polypeptide=Lus10023274 locus=Lus10023274.g ID=Lus10023274.BGIv1.0 annot-version=v1.0 ATGGCTTGCATGAAACTGGGATCTAAGTCCGATTCCTTTCAGCGGCAGGGCCAGGCTTGGTTCTGCACAAATGAGCTCCCGACTGATATAGTGGTAGAAG TTGAGGAGATGACTTTCCATCTTCACAAGTTTCCACTGTCCTCCAGAAGTGGGGTTATGGAGATGTTGATTGCTGAAGCTACGGAAGGAGACGAAAAATG CACCATTCGCCTCTCTGAGGTTCCCGGTGGAGCTAAAACATTTGAGCTTGTTGCCAAGTTCTGCTACGGAGTAAAGCTCGAGCTCACCGCTTCAAATGTC GTATACCTCCGTTGTGCTGCCGAGCACCTCGAATTGACCGAAGATTACTTTGAGGGAAATCTTATATCACAGACCGAGACATTCTTAAACCATGTCGTGC TTCGAAATTGGAAAGACTCACTTAAGGCTCTGCAAACTTGTGACGATGTCATTCTTTCCTATGCCGACAGACTTAACATCACAAAGAGATGCATCGATTC TCTAGCTTCGAAAGCCGGTAGAGATCCCAACTTGTTTGGATGGCCGGTAATGGAGCATGGTCCTATGCAGAGCCCCGGGGGGAGCGTGTTATGGAACGGG ATAAGCACAGGGGCTAGACCGAAAAATCTGAGTACAGATTGGTGGTACGAGGATGCATCGAGCTTAAGCTTACCACTCTACAAGAGGTTGATTTCTACTA TGGAATCTCGCGGTATGAAAGCCGAGATTATCGCTGGATCTGTCGCATTCTATGCGAAAGTGTACCTCCCGGGTCTGAATAGGCGTCAAGGTGCTTCTAA CGAGTCTAGTGCTCGACTGATGCCATTGGCTTTGGGAGCTCAAGCATCAGAGGAAGACCAGAGAACGTTACTTGAAGAGATCGACAGATTGCTACCAACG CAAAAGTGTCTAGTCTCGACGAGATTTCTCTTCAGCTTACTGAAGACGGCGATGATTCTCAAGGCTGATCCGTCCCGTTTGTCGAGTTTAGAGAAGAGAA TAGGGATGCAGCTCGATCAAGCAACTCTGGATGATCTTCTGATGCCTAACTTCTCACATTCGATGGAGACCCTTTACAACGTGGACTGCATGCAGCGAAT TCTCGAACATTTCGTCGCCATGGATCAGATCGCCGATGGTGGTGGGGCTTCTCCCGGTTCCGTTGCTGACAGTCAGTTGATTGGCTCGCCATCTTTGACC CCGATCACAACGGTGGCCAAGTTGATCGACGGATACCTCGCAGAGGTCGCCCCGGACGTTAATTTGAAGCTCTCGAAGTTTCAGGATCTGGCTGCTGCTG TTCCTGAATATGGGAGGCCTCTCGACGATGGCCTTTATCGCGCCATAGATATTTACTTGAAGTCTCATCCGTGGCTATCGGAGGCCGAGAGAGAACAACT CTGCAGGTTGATGGACTGCCAGAAGCTTTCGTTAGAAGCATGCACTCACGCCGCACAGAACGAGAGGTTACCCCTAAGGGTAGTAGTCCAAGTTCTCTTC TTCGAGCAGCTTCAGCTAAGGACATCCATTGCAGGCTGTTTCATGGTCTCGGGGACCCTGGATGGTGGGTCGAGACAGATGAGGGGCGGCACGGTGTCGG GGGAAGGAGGAGGAGGATGGGCTTCGGCGGTGAGAGAAAATCAAGTGCTGAAAGTAGGGATGGACAACATGAGGATGAGGGTGTCGGAGCTTGAGAAGGA ATGTACCACAATGAGGCGGGAAATCGAGAAGCTGGGACGAAACAACAAAGCAACAGCCGGTGGTGGTCCTGTTGTTTCTTACAGCTCAAGTGCATGGGGG AACGTGTCGAGGAAACTCGGGTTGAAGGCGAAGTCGCAGATGTGTAGCGCTCAAGAAGAGTCGGTGAGTAGCCAGACCGAGAAAGCGAAGCAGAGGCGTC CCAAGCACAAGAAAATCTTGTTCCCAGATGGGTAG
AA sequence Show only first row Show all	>Lus10023274 pacid=23180965 polypeptide=Lus10023274 locus=Lus10023274.g ID=Lus10023274.BGIv1.0 annot-version=v1.0 MACMKLGSKSDSFQRQGQAWFCTNELPTDIVVEVEEMTFHLHKFPLSSRSGVMEMLIAEATEGDEKCTIRLSEVPGGAKTFELVAKFCYGVKLELTASNV VYLRCAAEHLELTEDYFEGNLISQTETFLNHVVLRNWKDSLKALQTCDDVILSYADRLNITKRCIDSLASKAGRDPNLFGWPVMEHGPMQSPGGSVLWNG ISTGARPKNLSTDWWYEDASSLSLPLYKRLISTMESRGMKAEIIAGSVAFYAKVYLPGLNRRQGASNESSARLMPLALGAQASEEDQRTLLEEIDRLLPT QKCLVSTRFLFSLLKTAMILKADPSRLSSLEKRIGMQLDQATLDDLLMPNFSHSMETLYNVDCMQRILEHFVAMDQIADGGGASPGSVADSQLIGSPSLT PITTVAKLIDGYLAEVAPDVNLKLSKFQDLAAAVPEYGRPLDDGLYRAIDIYLKSHPWLSEAEREQLCRLMDCQKLSLEACTHAAQNERLPLRVVVQVLF FEQLQLRTSIAGCFMVSGTLDGGSRQMRGGTVSGEGGGGWASAVRENQVLKVGMDNMRMRVSELEKECTTMRREIEKLGRNNKATAGGGPVVSYSSSAWG NVSRKLGLKAKSQMCSAQEESVSSQTEKAKQRRPKHKKILFPDG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30440			Phototropic-responsive NPH3 fa...		Lus10023274 [exp]	0	1
AT5G55630		ATTPK1, ATKCO1	TWO PORE K CHANNEL 1, TWO PORE...		Lus10016613 [exp]	2.4	0.7871
AT2G36290			alpha/beta-Hydrolases superfam...		Lus10039775 [exp]	4.6	0.7740
AT5G57240		ORP4C	OSBP(oxysterol binding protein...		Lus10040586 [exp]	8.0	0.7682
AT1G35720		ATOXY5, ANNAT1	annexin 1 (.1)		Lus10003611 [exp]	10.1	0.7829
AT1G49420			Heavy metal transport/detoxifi...		Lus10038786 [exp]	12.0	0.7635
AT4G38690			PLC-like phosphodiesterases su...		Lus10034483 [exp]	13.0	0.7590
AT5G62580			ARM repeat superfamily protein...		Lus10033129 [exp]	13.5	0.7283
AT5G02380		MT2B	metallothionein 2B (.1)		Lus10024396 [exp]	16.2	0.6980
AT2G16760			Calcium-dependent phosphotries...		Lus10015347 [exp]	19.3	0.7313
AT5G40250			RING/U-box superfamily protein...		Lus10014526 [exp]	19.7	0.7522

Compare expression of checked genes

Lus10023274 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.