Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34660 2508 / 0 EST4, ATMRP2, ABCC2, AtABCC2 Arabidopsis thaliana ATP-binding cassette C2, ATP-binding cassette C2, multidrug resistance-associated protein 2 (.1.2) AT1G30400 2482 / 0 ATABCC1, EST1, ATMRP1 ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 1, Arabidopsis thaliana ATP-binding cassette C1, ATP-binding cassette C1, multidrug resistance-associated protein 1 (.1.2) AT1G30410 2092 / 0 ATMRP13, ABCC12 ATP-binding cassette C12, multidrug resistance-associated protein 13 (.1) AT1G30420 2070 / 0 ATMRP12, ABCC11 ATP-binding cassette C11, multidrug resistance-associated protein 12 (.1) AT2G47800 746 / 0 EST3, ATMRP4, ABCC4 ATP-binding cassette C4, multidrug resistance-associated protein 4 (.1) AT3G60160 736 / 0 ATMRP9, ABCC9 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1) AT3G62700 723 / 0 ATMRP10, ABCC14 ATP-binding cassette C14, multidrug resistance-associated protein 10 (.1) AT3G59140 704 / 0 ATMRP14, ABCC10 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) AT3G21250 690 / 0 ATMRP6, ABCC8 ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 6, ATP-binding cassette C8, multidrug resistance-associated protein 6 (.1.2) AT3G13080 690 / 0 EST2, ATMRP3, ABCC3 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038530 [exp] 3166 / 0 AT2G34660 2543 / 0.0 Arabidopsis thaliana ATP-binding cassette C2, ATP-binding cassette C2, multidrug resistance-associated protein 2 (.1.2) Lus10036153 [exp] 1966 / 0 AT2G34660 2041 / 0.0 Arabidopsis thaliana ATP-binding cassette C2, ATP-binding cassette C2, multidrug resistance-associated protein 2 (.1.2) Lus10022858 [exp] 748 / 0 AT1G04120 2341 / 0.0 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2) Lus10018027 [exp] 744 / 0 AT3G60160 1863 / 0.0 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1) Lus10042023 [exp] 739 / 0 AT3G60160 1869 / 0.0 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1) Lus10039320 [exp] 736 / 0 AT3G59140 1991 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Lus10011498 [exp] 731 / 0 AT2G47800 1796 / 0.0 ATP-binding cassette C4, multidrug resistance-associated protein 4 (.1) Lus10027567 [exp] 729 / 0 AT3G59140 2001 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Lus10023139 [exp] 706 / 0 AT3G62700 1659 / 0.0 ATP-binding cassette C14, multidrug resistance-associated protein 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G091200 [exp] 2680 / 0 AT2G34660 2491 / 0.0 Arabidopsis thaliana ATP-binding cassette C2, ATP-binding cassette C2, multidrug resistance-associated protein 2 (.1.2) Potri.004G034800 [exp] 2333 / 0 AT1G30410 2242 / 0.0 ATP-binding cassette C12, multidrug resistance-associated protein 13 (.1) Potri.004G034700 [exp] 2307 / 0 AT1G30410 2216 / 0.0 ATP-binding cassette C12, multidrug resistance-associated protein 13 (.1) Potri.011G043100 [exp] 2084 / 0 AT1G30410 2090 / 0.0 ATP-binding cassette C12, multidrug resistance-associated protein 13 (.1) Potri.014G180100 [exp] 775 / 0 AT3G60160 1930 / 0.0 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1) Potri.014G130500 [exp] 761 / 0 AT3G62700 2059 / 0.0 ATP-binding cassette C14, multidrug resistance-associated protein 10 (.1) Potri.002G205500 [exp] 744 / 0 AT3G62700 2043 / 0.0 ATP-binding cassette C14, multidrug resistance-associated protein 10 (.1) Potri.001G362200 [exp] 726 / 0 AT3G13080 1952 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.001G362300 [exp] 718 / 0 AT3G13080 2008 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.008G179500 [exp] 713 / 0 AT3G13080 1261 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0241 [flax] [poplar] ABC_membrane PF00664 [flax] [poplar] ABC_membrane ABC transporter transmembrane region CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10023275 pacid=23181036 polypeptide=Lus10023275 locus=Lus10023275.g ID=Lus10023275.BGIv1.0 annot-version=v1.0 ATGGCTTTTGACCCATTGGATTGGTACTGCCGACCGTTGCCCGATGGGCTGTGGGCAAAGGTCGTGCGGAATGCCTTTGGTCCATACACACCATGCGTGA CGGATACAGTGGTGATGGTTTTTTCTGACTTGGTTCTAATGGGACTGTGTATCTACCGGATATGGCTCACCATGAAAGATCACAAGGCTCGCCGCTTCTG TTTGAAGTCGAATTGGTACAACTATCTGCTGGGTGTACTGGCTGCTTATGTTGCAGCGGAGCCATTGTTTAGACTTGTCATGGGGATTTCAGCTTTGGAT ATTGATGGACAAATAGGTCTTGCTCCGTTTGAGGTGGCTTCCTTGATTGTTGAGGCTCTTGCTTGGTGCTCCATGTTGGTAATGATTGGTTTAGAGACCA AGGTATACATCACGGAGTTTCGATGGGTTGTCAAGTTCGGGGTCGTTTATACCTTGGTGGGGGATATAGTGATGCTCAATCTTGTTCTTTCAGTAAAGGA CTATTATAATAGCTCTGCACTCTATTGGTACATCAGCGAAGTTGCTGTTCAGGTACTGTTTGGAATACTTCTGCTCGTGTATTTCCCGGATATGGTTCCT TACCCTGGTTACACCCCTGCGCGAACCGATATTTTGGATGATAACGAGTACGAAGAACTGCCTGGCGGAGAATACATATGTCCTGAGCGCCACGTGAATA TATTTTCCAATATCATCTTTTCCTGGATGAGTCCACTAATGCAGCTCGGCTATAAACGACCCATCACTGAGAAGGATGTCTGGAAATTGGATACCTGGGA TCAAACTGAGACTCTAAATGATAGGTTTCAGAAATGCTGGGCTGAGGAATCACGGAAACCGAAGCCTTGGATTTTGAGGGCATTAAATAAGAGTCTTGGA GGAAGGTTTTGGTGGGGAGGCTTTTGGAAGATTGGAAATGATGCTTCCCAATTTGTTGGGCCACTTTTACTTAACCAGCTTCTACAGTCAATGCAAGCAG GTGACCCGGCTTGGATTGGATACATATACGCTTTCTCAATCTTTGTAGGCGTGGTATTGGGCGTTTTAAGTGAAGCTCAGTATTTTCAGAATGTGATGCG TGTTGGGTTCCGCCTGAGAGCAACATTGGTTGCTGCTGTATTTCGGAAATCTCTAAGGCTGACTCATGAAAGTCGGCGTAGGTTTCCATCTGGAAAAATC ACCAACTTGATGACAACTGATTCCGAGTCACTGCAGCAAGTATGTCAATCACTTCATACTCTGTGGTCAGCCCCTTTCCGCATTATCATTGCAATGGTGC TTCTCTATCAGCAGCTTGGTGTTGCATCACTTATAGGTGCATTAATGCTTGCACTTCTGATACCTATTCAGACAATTGTTATAAGCAGAATGCAGAAGTG GTCTAAGGAGGGTCTGCAGCGTACAGACAAGCGAATCGGGCTTATGAATGAAATTTTGGCTGCAATGGACACTGTGAAATGTTATGCATGGGAGAATAGT TTCCAGGCTAAGGTCCAAAGCGTTCGAGATGATGAGTTGTCATGGTTTCGTAAAGCATCATTACTAGGAGCGTTGAATGGTTTCATAATAAACAGCATCC CTGTTCTGGTGACGGTGGTTTCATTTGGTGTCTTCACTTTGCTTGGAGGAAATCTGACACCTGCTGTAGCGTTCACTTCACTTTCCCTGTTTGCCGTGCT TCGCTTTCCCCTCTTCATGCTTCCTAATATGATCACTCAGGTAGTGAACGCTAATGTATCTTTGAAGCGGTTGGAGGATCTATTATTGGCTGAAGACAGA GTACTTATGCCAAACCCCCCTCTTGATCCTGAACTGCCAGCCATCTCAATAAAAAATGGGAACTTCGCATGGGATTCCAAGGCAGAGACGCCCACATTAT CAAACATCAACTTGGATGTACCGATTGGTAGCTTGGTTGCAATTGTTGGAGGTACCGGAGAAGGGAAAACCTCGCTCATTTCAGCAATGCTTGGGGAGCT TCCTGCCTTTGGGGATTCAAGTGTTGTTTTAAGAGGAACAGTAGCTTATGTTCCTCAAATATCTTGGATCTTCAATGCAACTGTTCGTGATAATATACTG TTTGGATCTCCTTTTGATTCTACAAGATATGGGAAGTCAATAGACGTAACTGCATTGCAGCATGATCTTGAATTGCTTCCGGGTGGTGATCTCACTGAGA TTGGCGAAAGAGGAGTTAATATTAGCGGTGGGCAGAAGCAGCGAGTTTCCATGGCTAGGGCCGTGTATGCTGATTCAGATGTCTATATCTTTGATGACCC ATTGAGTGCTCTAGATGCTCATGTAGCTCGACAGGTTTTCGATAAATGTCTCCGAGGGGAATTGAGCAAGAAGACTAGAGTTCTGGTCACAAACCAGCTA CATTTCCTTTCGCAAGTCGATAAAATCATCTTAGTCCATGAGGGCACCGTCAAAGAGGAGGGAACCTTTGAGGAACTGTCTAGTAACGGTGTTCTGTTCC AGAAGCTTATGGAAAATGCTGGGAAAATGGAAGAATATGCAGATGAGAGGGAAGATGATGAAGCCACGGAAAAGAAAACATCTTCAAAACCTGTGAGTAA TGGCAATGGTCAAATAAACGGAGAACCTGAAGCAAAGAAGCCCAAAGAAGGCAAATCTATTCTCATTAAGCAAGAAGAGCGTGAAACAGGTGTCATCAGT TGGAAAGTTGTGTCAAGATACAAGAATGCATTAGGAGGTACTTGGGTGGTTTGCGTACTCCTTTCCTGCTATGTAATGTCAGAGGTTCTGCGTGTTTCAA GTAGTACTTGGTTGAGCAATTGGACTGACCAGGGTGCTTCATCAAGGCATGGACCTGGTTTCTACAATCTCATCTATGGACTTCTCTCCTTTGGCCAGGT TATGACAACATTAGTAAATTCATACTGGTTGATTCTGAGTAGTTTGTATGCTGCGAAAAGGCTACATGATGCGATGCTTGGGTCAATGTTAAGAGCTCCA ATGGTCTTCTTCCACACTAATCCACTTGGGCGTATTATCAATAGATTTGCAAAGGATATGGGAGATATTGATCGAACTGTTGCTCCTTTTGTTAACATGT TTCTTGGGCAAGTAGCACAACTACTCTCTACATTTGTCCTCATAGGAATTGTGAGCACCATGTCCTTGTGGGCCATTATGCCACTTTTGGTACTTTTTTA CTGGGCATATCTATATTATCAGAGCACTGCTCGTGAAGTGAAGCGGCTGGATTCTATATCGCGATCCCCTGTCTATGCACAATTTGGTGAAGCGTTGAAT GGTCTATCAGCTATTCGTGCTTACAAAGCTTATGACCGCATGGCTGACATCAACGGGAGATCTATGGACAACAATTTGAGATATACCCTTGTCAACATGG GTGCTAATCGCTGGCTTGCAATCCGTCTGGAGACAATAGGAGGTCTTATGATTTGGTTCACAGCGACATTTGCTGTAATGCAAAATGGAAGGGCGGAGAA CCAGCAGGATTATGCATCTACAATGGGTCTGCTTCTGAGTTATGCGTTGAATATTACAAGTTTGTTGACTGGTGTGCTAAGGCTTGCAAGTTTGGCTGAG AACAGTTTAAATGCTGTGGAGAGAGTTGGCACTTACATAGAGTTGCCATCAGAAGCTCCGGGTATTATTGAAAATAACCGCCCTCCTCCTGGATGGCCAT CATCAGGATCCATCAAGTTTGAAGATGTTGTCTTACGTTACAGGCCTGAACTTCCTCCTGTCCTTCATGGCTTATCCTTCAGAATTTCTCCAAGTGATAA GGTTGGGATCGTCGGAAGGACTGGTGCTGGCAAATCCAGTATGCTGAATGCTTTATTTCGTATTGTGGAGTTGGAAAGGGGAAGAATCTTGATTGATAAT TGTGATATCGCAAAGTTTGGATTGCTGGATCTTCGTAAAGTGCTCGGAATTATACCACAATCTCCTGTTCTGTTTTCAGGTTCTGTAAGGTTTAACCTTG ATCCATTCAATGAACACAATGATGCCGATCTTTGGGAGTCTCTAGAGAGGGCACACTTGAAGGATGCTATTCGAAGGAACTCCTTGGGTCTGGATGCAGA GGTTTCCGAGGCAGGAGAGAACTTCAGTGTTGGGCAGAGACAACTACTGAGTCTTGCTCGAGCATTATTGCGCAGATCCAAGATCCTGGTTCTTGACGAG GCTACTGCAGCAGTCGATGTCAGGACAGATGCCCTCATTCAGAAAACCATTAGGGAAGAATTCAGAGCATGCACAATGCTTATAATTGCTCACCGGCTGA ATACAATCATCGACTCTGACCGCGTCCTTCTGCTCGACTCTGGCCGGGTTCTGGAATATGACAGTCCAGAAGAGTTGTTGTCACGTGAAGACAGTGCTTT CTCGAAGATGGTTCAAAGCACGGGATCTGCCAATGCTCAGTACTTGCGCAGTTTAGTACTAGGAGGGGAAGGAGAGGGCAGGCCAAGCAAAGCGGGTAAA CAGTTAGATGAACAGAGGAAATGGCTGGCCTCTTCTAGGTGGGCTGCTGCCACAAACTATGCTCTTGGTATCAGCCTCACTTCGTCACATAACGACCTTC ATCGTTTAGAGATCGAGGATGAGAACTCCATCCTGAAGAAAACAAAAGATGCGGTGGTGACGTTGCAGGCAGTTCTGGAAGGGAAACATGACGCGGCAAT TGAAGAGACTTTGGAACAGCACCAGATTCCCAGAGAGGGATGGTGGTCGTCGCTATACAAAATGGTGGAAGGTCTTGCAATGATGGGCAGATTGAGTAGG AACAGATTGAACCAATCCGGGTATGGGTTTGAAGAGAATGCAATCGATTGGGATCATGTCGAAATGTAG
AA sequence Show only first row Show all	>Lus10023275 pacid=23181036 polypeptide=Lus10023275 locus=Lus10023275.g ID=Lus10023275.BGIv1.0 annot-version=v1.0 MAFDPLDWYCRPLPDGLWAKVVRNAFGPYTPCVTDTVVMVFSDLVLMGLCIYRIWLTMKDHKARRFCLKSNWYNYLLGVLAAYVAAEPLFRLVMGISALD IDGQIGLAPFEVASLIVEALAWCSMLVMIGLETKVYITEFRWVVKFGVVYTLVGDIVMLNLVLSVKDYYNSSALYWYISEVAVQVLFGILLLVYFPDMVP YPGYTPARTDILDDNEYEELPGGEYICPERHVNIFSNIIFSWMSPLMQLGYKRPITEKDVWKLDTWDQTETLNDRFQKCWAEESRKPKPWILRALNKSLG GRFWWGGFWKIGNDASQFVGPLLLNQLLQSMQAGDPAWIGYIYAFSIFVGVVLGVLSEAQYFQNVMRVGFRLRATLVAAVFRKSLRLTHESRRRFPSGKI TNLMTTDSESLQQVCQSLHTLWSAPFRIIIAMVLLYQQLGVASLIGALMLALLIPIQTIVISRMQKWSKEGLQRTDKRIGLMNEILAAMDTVKCYAWENS FQAKVQSVRDDELSWFRKASLLGALNGFIINSIPVLVTVVSFGVFTLLGGNLTPAVAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRLEDLLLAEDR VLMPNPPLDPELPAISIKNGNFAWDSKAETPTLSNINLDVPIGSLVAIVGGTGEGKTSLISAMLGELPAFGDSSVVLRGTVAYVPQISWIFNATVRDNIL FGSPFDSTRYGKSIDVTALQHDLELLPGGDLTEIGERGVNISGGQKQRVSMARAVYADSDVYIFDDPLSALDAHVARQVFDKCLRGELSKKTRVLVTNQL HFLSQVDKIILVHEGTVKEEGTFEELSSNGVLFQKLMENAGKMEEYADEREDDEATEKKTSSKPVSNGNGQINGEPEAKKPKEGKSILIKQEERETGVIS WKVVSRYKNALGGTWVVCVLLSCYVMSEVLRVSSSTWLSNWTDQGASSRHGPGFYNLIYGLLSFGQVMTTLVNSYWLILSSLYAAKRLHDAMLGSMLRAP MVFFHTNPLGRIINRFAKDMGDIDRTVAPFVNMFLGQVAQLLSTFVLIGIVSTMSLWAIMPLLVLFYWAYLYYQSTAREVKRLDSISRSPVYAQFGEALN GLSAIRAYKAYDRMADINGRSMDNNLRYTLVNMGANRWLAIRLETIGGLMIWFTATFAVMQNGRAENQQDYASTMGLLLSYALNITSLLTGVLRLASLAE NSLNAVERVGTYIELPSEAPGIIENNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFRISPSDKVGIVGRTGAGKSSMLNALFRIVELERGRILIDN CDIAKFGLLDLRKVLGIIPQSPVLFSGSVRFNLDPFNEHNDADLWESLERAHLKDAIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDE ATAAVDVRTDALIQKTIREEFRACTMLIIAHRLNTIIDSDRVLLLDSGRVLEYDSPEELLSREDSAFSKMVQSTGSANAQYLRSLVLGGEGEGRPSKAGK QLDEQRKWLASSRWAAATNYALGISLTSSHNDLHRLEIEDENSILKKTKDAVVTLQAVLEGKHDAAIEETLEQHQIPREGWWSSLYKMVEGLAMMGRLSR NRLNQSGYGFEENAIDWDHVEM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34660		EST4, ATMRP2, A...	Arabidopsis thaliana ATP-bindi...		Lus10023275 [exp]	0	1
AT1G07180		NDA1, ATNDI1	ARABIDOPSIS THALIANA INTERNAL ...		Lus10020091 [exp]	6.3	0.8572
AT3G10550		MTM1, AtMTM1	Arabidopsis thaliana myotubula...		Lus10038641 [exp]	9.5	0.8451
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10014831 [exp]	12.3	0.8593
AT1G65820			microsomal glutathione s-trans...		Lus10020793 [exp]	17.2	0.8547
AT3G47730		ABCA2, ATATH1	A. THALIANA ABC2 HOMOLOG 1, AT...		Lus10023613 [exp]	17.5	0.8446
AT2G28710	C2H2ZnF		C2H2-type zinc finger family p...		Lus10023433 [exp]	21.4	0.8342
AT1G78780			pathogenesis-related family pr...		Lus10018919 [exp]	31.2	0.8206
AT1G51340			MATE efflux family protein (.1...		Lus10026303 [exp]	37.1	0.8452
AT1G47530			MATE efflux family protein (.1...		Lus10002366 [exp]	41.4	0.7969
AT1G47530			MATE efflux family protein (.1...		Lus10002365 [exp]	43.2	0.8172

Compare expression of checked genes

Lus10023275 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.