Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05430 145 / 6e-45 Carbohydrate-binding X8 domain superfamily protein (.1) AT5G56590 116 / 1e-30 O-Glycosyl hydrolases family 17 protein (.1) AT1G09460 108 / 2e-28 Carbohydrate-binding X8 domain superfamily protein (.1) AT4G29360 108 / 7e-28 O-Glycosyl hydrolases family 17 protein (.1.2) AT1G66250 107 / 3e-27 O-Glycosyl hydrolases family 17 protein (.1) AT1G11820 106 / 5e-27 O-Glycosyl hydrolases family 17 protein (.1.2) AT1G29380 103 / 6e-27 Carbohydrate-binding X8 domain superfamily protein (.1) AT2G30933 101 / 1e-26 Carbohydrate-binding X8 domain superfamily protein (.1.2) AT1G66870 97 / 2e-26 Carbohydrate-binding X8 domain superfamily protein (.1) AT5G35740 95 / 2e-25 Carbohydrate-binding X8 domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038529 [exp] 339 / 2e-120 AT4G05430 146 / 9e-45 Carbohydrate-binding X8 domain superfamily protein (.1) Lus10012937 [exp] 124 / 1e-33 AT5G56590 617 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10034987 [exp] 117 / 3e-31 AT5G56590 562 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10004546 [exp] 102 / 2e-26 AT1G29380 175 / 2e-52 Carbohydrate-binding X8 domain superfamily protein (.1) Lus10015151 [exp] 104 / 3e-26 AT2G05790 731 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10004600 [exp] 102 / 4e-26 AT1G29380 168 / 7e-50 Carbohydrate-binding X8 domain superfamily protein (.1) Lus10007342 [exp] 100 / 4e-26 AT2G30933 167 / 4e-51 Carbohydrate-binding X8 domain superfamily protein (.1.2) Lus10031456 [exp] 102 / 1e-25 AT1G11820 796 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10018306 [exp] 100 / 7e-25 AT5G55180 632 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G012000 [exp] 197 / 4e-65 AT4G05430 155 / 3e-49 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.007G111000 [exp] 193 / 2e-63 AT4G05430 148 / 5e-46 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.019G007800 [exp] 191 / 1e-62 AT4G05430 160 / 4e-51 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.018G068600 [exp] 130 / 1e-35 AT5G56590 685 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.005G003500 [exp] 108 / 1e-27 AT2G30933 142 / 1e-38 Carbohydrate-binding X8 domain superfamily protein (.1.2) Potri.013G003500 [exp] 108 / 1e-27 AT1G09460 144 / 3e-38 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.001G353400 [exp] 104 / 4e-27 AT1G29380 144 / 1e-40 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.017G055700 [exp] 101 / 6e-27 AT4G13600 152 / 3e-46 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.011G078500 [exp] 103 / 1e-26 AT1G29380 154 / 1e-44 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.002G059600 [exp] 101 / 1e-26 AT2G30933 164 / 5e-50 Carbohydrate-binding X8 domain superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07983 [flax] [poplar] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Lus10023276 pacid=23181089 polypeptide=Lus10023276 locus=Lus10023276.g ID=Lus10023276.BGIv1.0 annot-version=v1.0 ATGACGACATTCAGGAAGAAGAACAAGATGATCCCCATGCTTGCCTACTTGCAATGCGCCTTCTTTCTCGCACAATCATTCCACTTCGGCAACGCGCGGG GGATTGAGGCGGCGGCGGAGAGGGTGGAGGGGGCGATTCCGATGACGACGTCCTCGCCGCCGGAAGGGAATACGACGTTCCTGGACGGGACGACGTGGTG CGTGGCGGCGGCAGGGGCGCCACAGATAGATCTGCAGAAGGCATTGGACTGGGCGTGTGGGTTGGGAATGGCGGAGTGTAAGGAGATTCAGGAGGAAGGA GCGTGCTTTCACCCCAACAACTTGGTCTCCCACGCTTCCTACGCTTTCAATAGCTATTACCAGCAGAATGGCAACTCCGACATCGCCTGTAACTTCGGCG GCGCTGCTTCACTTACCAAACACGACCCCAGTTATGGGAAGTGCATATATGCATCAGCTGGATCTGTTGGGTGGGGAACTGAGTTGAGACCAGAGGTTGG AATATGGTGGAAGTTTGCTGTGATTCTGATGCTATTGTACTGGCAAACTAGCTAG
AA sequence Show only first row Show all	>Lus10023276 pacid=23181089 polypeptide=Lus10023276 locus=Lus10023276.g ID=Lus10023276.BGIv1.0 annot-version=v1.0 MTTFRKKNKMIPMLAYLQCAFFLAQSFHFGNARGIEAAAERVEGAIPMTTSSPPEGNTTFLDGTTWCVAAAGAPQIDLQKALDWACGLGMAECKEIQEEG ACFHPNNLVSHASYAFNSYYQQNGNSDIACNFGGAASLTKHDPSYGKCIYASAGSVGWGTELRPEVGIWWKFAVILMLLYWQTS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G05430			Carbohydrate-binding X8 domain...		Lus10023276 [exp]	0	1
AT4G05430			Carbohydrate-binding X8 domain...		Lus10038529 [exp]	1.0	0.9593
					Lus10025868 [exp]	4.9	0.9440
					Lus10010378 [exp]	5.7	0.9434
AT1G07400			HSP20-like chaperones superfam...		Lus10021503 [exp]	6.5	0.9338
AT2G36650			unknown protein		Lus10014389 [exp]	7.4	0.9398
					Lus10032860 [exp]	9.2	0.9401
AT5G04890		RTM2	RESTRICTED TEV MOVEMENT 2, HSP...		Lus10028874 [exp]	10.4	0.9349
AT1G07400			HSP20-like chaperones superfam...		Lus10021109 [exp]	12.2	0.9257
AT2G36650			unknown protein		Lus10023883 [exp]	13.7	0.9253
AT5G63710			Leucine-rich repeat protein ki...		Lus10025703 [exp]	14.7	0.9244

Compare expression of checked genes

Lus10023276 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.