Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05460 246 / 5e-80 RNI-like superfamily protein (.1) AT4G05475 211 / 3e-66 RNI-like superfamily protein (.1) AT4G05470 203 / 4e-63 RNI-like superfamily protein (.1) AT4G05490 186 / 2e-56 RNI-like superfamily protein (.1) AT4G05497 178 / 4e-54 RNI-like superfamily protein (.1) AT4G03630 177 / 7e-54 RNI-like superfamily protein (.1) AT5G52480 167 / 9e-50 RNI-like superfamily protein (.1.2) AT4G08980 115 / 2e-29 FBW2 F-BOX WITH WD-40 2 (.1.2.3.4.5) AT5G57900 108 / 3e-27 SKIP1 SKP1 interacting partner 1 (.1) AT4G30640 88 / 1e-19 RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038528 [exp] 671 / 0 AT4G05460 249 / 5e-81 RNI-like superfamily protein (.1) Lus10026115 [exp] 300 / 5e-101 AT4G05460 166 / 3e-49 RNI-like superfamily protein (.1) Lus10008704 [exp] 262 / 5e-87 AT4G03630 162 / 4e-50 RNI-like superfamily protein (.1) Lus10036483 [exp] 106 / 6e-26 AT4G08980 347 / 6e-120 F-BOX WITH WD-40 2 (.1.2.3.4.5) Lus10010351 [exp] 100 / 5e-24 AT4G08980 345 / 4e-119 F-BOX WITH WD-40 2 (.1.2.3.4.5) Lus10019104 [exp] 79 / 2e-16 AT5G57900 352 / 4e-122 SKP1 interacting partner 1 (.1) Lus10034452 [exp] 78 / 5e-16 AT5G57900 355 / 3e-123 SKP1 interacting partner 1 (.1) Lus10040998 [exp] 67 / 6e-12 AT5G23340 595 / 0.0 RNI-like superfamily protein (.1) Lus10013444 [exp] 66 / 2e-11 AT5G23340 591 / 0.0 RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G099100 [exp] 103 / 7e-25 AT4G08980 352 / 1e-121 F-BOX WITH WD-40 2 (.1.2.3.4.5) Potri.018G104900 [exp] 99 / 2e-23 AT5G57900 377 / 8e-132 SKP1 interacting partner 1 (.1) Potri.016G019500 [exp] 62 / 1e-10 AT3G48880 76 / 7e-16 RNI-like superfamily protein (.1.2) Potri.005G088800 [exp] 59 / 2e-09 AT5G23340 567 / 0.0 RNI-like superfamily protein (.1) Potri.012G137700 [exp] 52 / 2e-07 AT3G48880 389 / 1e-136 RNI-like superfamily protein (.1.2) Potri.015G139700 [exp] 47 / 7e-06 AT3G48880 386 / 2e-135 RNI-like superfamily protein (.1.2) Potri.012G106700 [exp] 45 / 3e-05 AT3G48880 55 / 3e-08 RNI-like superfamily protein (.1.2) Potri.002G137100 [exp] 44 / 0.0001 AT2G44900 1300 / 0.0 F-box Armadillo protein 1, ARABIDILLO-1 (.1) Potri.016G128400 [exp] 43 / 0.0003 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.017G053400 [exp] 42 / 0.0004 AT1G80570 699 / 0.0 RNI-like superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10023277 pacid=23180986 polypeptide=Lus10023277 locus=Lus10023277.g ID=Lus10023277.BGIv1.0 annot-version=v1.0 ATGGCTTCGACAGCTACGCCTTCTTCTTCCTCTACGCCTCCTAGGAAGCCAATTAACACCAACCCTCATGCTCGGCTGCGCGGCAGCACCACCACCGTCA CCACTTCTCCATTGAAAAGGCTCAATTTGATGGATCCACCGACAGCGCACTCCGACGACGTCGAAGACGGATCTATGTTAGGAGGAGGTCGGGACTGGGC AGAAATGTCGCCGGAGCTACTCACCGTGATAATGAGCCATCTGAAGATAGTGGATCGGCTGAAGACCGCTCAGAAAGTCTGCTCCTCGTGGCGGAAAGTT TGCCGGGACCCTTACCTCTGGAGATCTATCGATATAAGGAAATGTTCGTGGGATCGAGTTTGTGATGTGGAGCTAGTCTGCAAGGAGGCTGTTGATCGGA GCTGCGGGGGTTTGGTTTCTCTCAAAATTGTGGGCTTTGGCACTGATCAACTGCTGGCTTACATCGCTAATGAATCAAGCCAGCTTAAGCGTCTTCAGCT CGTATACTGCAACAATCTCTCGGATCAAGGATTCAGTACAGCAGTTCAAAAGCTCCTCTTCCTCGAAGACCTAGAAATTTCGTATTGCTCCCTGTCCAAG GATGCATTATTGACCGCGGGGCGTTACTGCCCTTGCCTAACGTCGGTGAAACTGAACCAGACGGGATGCAGGTGGCCCCGCATAGAAAACGACGAGGCAA CAGCAATTGCAGAGAACATGCCTGGTTTGCACCACCTGCAGATATTCGGCAACAAGTTGACGAATCACGGTCTGCAAGCCATTCTCGACGGCTGCAAACA CTTGGAGTCGCTCGATCTTCGACAGTGTTTCAATGTACGCATGGAAGGGGACTTGGAGAAGAGATGCCGGATGCAGATCGAGGATCTGCGGTGTCCTGAT GATTCGACAGATGACTACCCTTACGATGCTGAGATTCCGGACTATGATTCGTCCGAAGAGGACTATCCTTCGGGATTCTCTGATCATGAGTTGTCCACCG GCGACGACTACTACGAGTTCTCTGCTGACAGCGAGCTCTCTGATGCAGAGTTTTATTGA
AA sequence Show only first row Show all	>Lus10023277 pacid=23180986 polypeptide=Lus10023277 locus=Lus10023277.g ID=Lus10023277.BGIv1.0 annot-version=v1.0 MASTATPSSSSTPPRKPINTNPHARLRGSTTTVTTSPLKRLNLMDPPTAHSDDVEDGSMLGGGRDWAEMSPELLTVIMSHLKIVDRLKTAQKVCSSWRKV CRDPYLWRSIDIRKCSWDRVCDVELVCKEAVDRSCGGLVSLKIVGFGTDQLLAYIANESSQLKRLQLVYCNNLSDQGFSTAVQKLLFLEDLEISYCSLSK DALLTAGRYCPCLTSVKLNQTGCRWPRIENDEATAIAENMPGLHHLQIFGNKLTNHGLQAILDGCKHLESLDLRQCFNVRMEGDLEKRCRMQIEDLRCPD DSTDDYPYDAEIPDYDSSEEDYPSGFSDHELSTGDDYYEFSADSELSDAEFY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G05460			RNI-like superfamily protein (...		Lus10023277 [exp]	0	1
AT1G54115		ATCCX4	cation calcium exchanger 4 (.1...		Lus10037682 [exp]	1.7	0.8912
AT2G13690			PRLI-interacting factor, putat...		Lus10020892 [exp]	5.3	0.8375
AT5G43050		NPQ6	NONPHOTOCHEMICAL QUENCHING 6, ...		Lus10038888 [exp]	7.5	0.8494
AT1G71740			unknown protein		Lus10041497 [exp]	12.9	0.8596
AT4G11150		TUFF, EMB2448, ...	embryo defective 2448, vacuola...		Lus10032349 [exp]	13.9	0.8495
AT2G45590			Protein kinase superfamily pro...		Lus10041395 [exp]	20.5	0.8319
AT4G22560			unknown protein		Lus10028927 [exp]	20.7	0.8578
AT2G17840		ERD7	EARLY-RESPONSIVE TO DEHYDRATIO...		Lus10014132 [exp]	21.5	0.8545
AT1G47056		VFB1	VIER F-box proteine 1 (.1)		Lus10018737 [exp]	21.6	0.8327
AT1G19910		AVA-2PE, ATVHA-...	VACUOLAR-TYPE H+ ATPASE C2, AT...		Lus10028370 [exp]	25.4	0.8308

Compare expression of checked genes

Lus10023277 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.