Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07220 197 / 2e-62 ATBAG3 BCL-2-associated athanogene 3 (.1) AT5G62100 195 / 9e-62 ATBAG2 BCL-2-associated athanogene 2 (.1.2.3) AT5G52060 179 / 4e-55 ATBAG1 BCL-2-associated athanogene 1 (.1) AT3G51780 147 / 3e-43 ATBAG4 BCL-2-associated athanogene 4 (.1) AT5G40630 98 / 2e-25 Ubiquitin-like superfamily protein (.1) AT5G14360 95 / 2e-24 Ubiquitin-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038882 [exp] 209 / 5e-67 AT5G52060 327 / 1e-111 BCL-2-associated athanogene 1 (.1) Lus10027420 [exp] 208 / 2e-66 AT5G52060 349 / 6e-120 BCL-2-associated athanogene 1 (.1) Lus10015004 [exp] 205 / 3e-65 AT5G52060 333 / 4e-114 BCL-2-associated athanogene 1 (.1) Lus10005772 [exp] 169 / 5e-51 AT5G52060 304 / 2e-102 BCL-2-associated athanogene 1 (.1) Lus10027822 [exp] 150 / 3e-44 AT3G51780 221 / 4e-71 BCL-2-associated athanogene 4 (.1) Lus10005051 [exp] 152 / 6e-44 AT3G51780 221 / 1e-69 BCL-2-associated athanogene 4 (.1) Lus10029598 [exp] 148 / 6e-44 AT5G52060 195 / 8e-61 BCL-2-associated athanogene 1 (.1) Lus10006328 [exp] 141 / 4e-41 AT5G52060 194 / 2e-60 BCL-2-associated athanogene 1 (.1) Lus10003393 [exp] 109 / 8e-29 AT3G51780 180 / 5e-56 BCL-2-associated athanogene 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G358200 [exp] 296 / 4e-102 AT5G07220 207 / 9e-66 BCL-2-associated athanogene 3 (.1) Potri.015G135500 [exp] 204 / 2e-64 AT5G52060 303 / 2e-101 BCL-2-associated athanogene 1 (.1) Potri.012G133400 [exp] 202 / 1e-63 AT5G52060 305 / 2e-102 BCL-2-associated athanogene 1 (.1) Potri.001G279500 [exp] 184 / 5e-58 AT3G51780 210 / 2e-67 BCL-2-associated athanogene 4 (.1) Potri.003G121500 [exp] 177 / 8e-55 AT5G52060 243 / 1e-78 BCL-2-associated athanogene 1 (.1) Potri.009G074300 [exp] 172 / 5e-53 AT3G51780 196 / 4e-62 BCL-2-associated athanogene 4 (.1) Potri.001G110300 [exp] 164 / 5e-49 AT5G52060 239 / 2e-76 BCL-2-associated athanogene 1 (.1) Potri.016G121200 [exp] 137 / 2e-39 AT3G51780 218 / 1e-70 BCL-2-associated athanogene 4 (.1) Potri.001G339100 [exp] 91 / 1e-22 AT5G14360 166 / 6e-53 Ubiquitin-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF00240 [flax] [poplar] ubiquitin Ubiquitin family CL0072 [flax] [poplar] PF02179 [flax] [poplar] BAG BAG domain
Representative CDS sequence Show only first row Show all	>Lus10023279 pacid=23181031 polypeptide=Lus10023279 locus=Lus10023279.g ID=Lus10023279.BGIv1.0 annot-version=v1.0 ATGAAGGATGATGAAGTGGAGTGGGAGATGAGACCGGGAGGGATGTTGGTCCAGAAGCGGCCGGAGAAGAGCGAGGCTCCGGCGCCTCCGGGCATTCGGA TTCGAGTTGCTTACGGTGCTCTCCGTTACCAGATCTCGGTGAACTCTCAGGCCACGTTTGGGGAAGTGAAGAAGCTGTTGAAGGAGGAAACAGGGTTAGA GGCAGGGGACCAGCGGGTGACGTTCAGAGGGAAAGATCGTCGTGACGGAGACTATCTCGACGCTTGCGGAGTCAAAGACCGATCCAAGATCGTCGTAACG GAGGATCCTTGTAGCATCGAGCGGAGGTACATGGAGATGCGGAAGAATGCCAGAATCCAGAGGTCACTTCGCACCATCTCCGACATCTGCATGGAGATTG ATAAGCTCGCCGACCAGGTTAGTGCCATGGAGGAGTCGATATCGGAACGTAAAAAGGTGCCGGAAGTACAGATTTCGACGTTGATGGAGGTTTTGATGAG GCAAGCTATTAGGCTTGATGAGATTTCTGCCGAAGGGGATGCTTCTTCTCAGCAGATCATTCAGAGCAAGAGGGTGCAAAAATGCGTGGAGAGACTGGAC GAACTCAAGGTAACGAATGCAAAGGTTGAAGCAGCAACCAAGTGTAAATGGGAGACCTTCGATCCTCCTCTACTTACTCCTTCTCAATGGCAGTTCTTCA ATTGA
AA sequence Show only first row Show all	>Lus10023279 pacid=23181031 polypeptide=Lus10023279 locus=Lus10023279.g ID=Lus10023279.BGIv1.0 annot-version=v1.0 MKDDEVEWEMRPGGMLVQKRPEKSEAPAPPGIRIRVAYGALRYQISVNSQATFGEVKKLLKEETGLEAGDQRVTFRGKDRRDGDYLDACGVKDRSKIVVT EDPCSIERRYMEMRKNARIQRSLRTISDICMEIDKLADQVSAMEESISERKKVPEVQISTLMEVLMRQAIRLDEISAEGDASSQQIIQSKRVQKCVERLD ELKVTNAKVEAATKCKWETFDPPLLTPSQWQFFN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07220		ATBAG3	BCL-2-associated athanogene 3 ...		Lus10023279 [exp]	0	1
AT1G58070			unknown protein		Lus10019953 [exp]	1.0	0.9915
AT3G17980		AtC2	Arabidopsis thaliana C2 domain...		Lus10018005 [exp]	3.2	0.9813
AT2G47010			unknown protein		Lus10007453 [exp]	3.5	0.9811
AT4G13940		MEE58, EMB1395,...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10032593 [exp]	3.7	0.9852
AT5G61750			RmlC-like cupins superfamily p...		Lus10022071 [exp]	4.6	0.9834
AT2G47180		ATGOLS1	galactinol synthase 1 (.1)		Lus10029145 [exp]	4.7	0.9760
AT3G62020		GLP10	germin-like protein 10 (.1.2)		Lus10009254 [exp]	5.3	0.9825
AT1G05675			UDP-Glycosyltransferase superf...		Lus10010468 [exp]	6.7	0.9520
AT3G57450			unknown protein		Lus10029496 [exp]	7.2	0.9612
AT3G14920			Peptide-N4-(N-acetyl-beta-gluc...		Lus10025775 [exp]	7.3	0.9679

Compare expression of checked genes

Lus10023279 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.