Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30370 308 / 5e-100 DLAH DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) AT1G06800 226 / 2e-69 PLA-I{gamma}1 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2) AT2G30550 221 / 3e-67 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G51440 213 / 1e-63 alpha/beta-Hydrolases superfamily protein (.1) AT1G05800 174 / 1e-49 DGL DONGLE, alpha/beta-Hydrolases superfamily protein (.1) AT4G18550 172 / 4e-49 AtDSEL Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) AT2G44810 166 / 9e-48 DAD1 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1) AT1G06250 166 / 7e-47 alpha/beta-Hydrolases superfamily protein (.1) AT2G31690 165 / 6e-46 alpha/beta-Hydrolases superfamily protein (.1) AT4G16820 162 / 1e-44 PLA-I{beta]2 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038526 [exp] 483 / 3e-168 AT1G30370 539 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10023280 [exp] 478 / 4e-166 AT1G30370 537 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10015521 [exp] 462 / 6e-162 AT1G30370 524 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10038524 [exp] 443 / 1e-154 AT1G30370 526 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10042914 [exp] 184 / 1e-53 AT2G44810 464 / 1e-163 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10010997 [exp] 177 / 5e-50 AT4G16820 551 / 0.0 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) Lus10025519 [exp] 172 / 1e-48 AT2G31690 468 / 3e-162 alpha/beta-Hydrolases superfamily protein (.1) Lus10004364 [exp] 169 / 4e-47 AT4G16820 587 / 0.0 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) Lus10017668 [exp] 166 / 8e-47 AT4G18550 420 / 1e-145 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G263200 [exp] 353 / 8e-118 AT1G30370 607 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Potri.009G057900 [exp] 347 / 1e-115 AT1G30370 626 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Potri.002G044700 [exp] 237 / 4e-73 AT1G06800 662 / 0.0 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2) Potri.005G218500 [exp] 233 / 2e-71 AT1G06800 652 / 0.0 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2) Potri.009G051900 [exp] 221 / 5e-67 AT1G51440 700 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G150700 [exp] 185 / 8e-54 AT2G31690 491 / 7e-172 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G231600 [exp] 181 / 6e-52 AT1G05800 524 / 0.0 DONGLE, alpha/beta-Hydrolases superfamily protein (.1) Potri.014G047700 [exp] 166 / 7e-47 AT2G44810 491 / 9e-174 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.002G137900 [exp] 164 / 4e-46 AT2G44810 543 / 0.0 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.001G153100 [exp] 165 / 8e-46 AT4G16820 575 / 0.0 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF01764 [flax] [poplar] Lipase_3 Lipase (class 3)
Representative CDS sequence Show only first row Show all	>Lus10023281 pacid=23180961 polypeptide=Lus10023281 locus=Lus10023281.g ID=Lus10023281.BGIv1.0 annot-version=v1.0 ATGGATTCATCCTTGCCGTCGACGATGGCCCATTTCACCGACGGGGGAGACCGGACGACTACCACGATATCCCCCAAGAGGGACATCTCTGCCCGGTGGC GAGAGTTCCACGGCGAAGGCGACTGGATGGCTGTCGACGGAGATGGTCTCCTGAGCCCGCTCCATCCTTGCCTCCGCCGCGAGATCATCAAGTACGGCGA GCTGGCTGTGGCCACCTACGAAGGCTTCGACTTCGACCCGCTCTCCGAATACTGCGGGAGCTGTAAGTTCAACTACAACAAGTTTCTCCAGGAGCTTGGC CTTGAGAACAAGCACGGATACAAGGCTACCCGTCATATCTACGCCCTGTCCCACGTGGACGTCCCTGATTGGGTGTCGAGGATATTCCCCATGTGGGATA AAGACTCCAACTGGATGGGGTATGTGGCGGTGAGTAATGACCAAGAATCCAAACGGATCGGACGTAGAGACATTGTTGTTGCGTGGCGCGGGACAGTAGC TCCGACCGAATGGTTCATCAACTTGAAAGTCAAGCTCTTCCGAGTCAACGATGTCAAAAAAGTCAAAGTTCAAAAAGGGTTCCACTCCATTTACACGTCC AAAGACGAGTCCAAGAAGTACAACAAATGTAGCGCTTCGGAACAAGTCATGGACGAGCTGGTCTGGCTGGTCGAACGCTACAGAAACAAAAATAAAGAAG AGATAAGTATAACCATAACTGGGCACAGCCTCGGAGGAGCGTTAGCCTTGTTAACGGCCGACGAGGCAGCGACTCGGTTTCCCGGAGTCTTCATCAGCGT AATATCCTTTGGAGCTCCGAGAGTTGGGAACTTGGCGTTCAGGGAGCAGCTGACAAAAAAGCTTGGAGTCAAAGTTCTCAGAGTGATCGTCGACCAGGAC ATTGTCCCCGAGCTTCCGGGGCCCATAGTCGACATAATTGTGAAGGAGGTGTGGCCCGGCATGAGGACCAAATGGAAGAAACTGACGAATGAAGTTGTGG GAGTGGTTGCTGGCCAAGATATTGTCGCTGACCTTCGAGGGACCTCATACACATCTTTCCGCGACAAATCAAGATTTGCCCAAAGTTCATTCAATTTTTT CAGGTTTCACATTGCCGCTAGCTTTGGTATGTCGAAATTTGGTAACCAATTTTATCATCCACCCGAGAGACACGATGGAACGGGACGAAACAGTGTTCAC GCTTGGCACCTTCGGAGAAGCTACAATGCTCAATTGTAA
AA sequence Show only first row Show all	>Lus10023281 pacid=23180961 polypeptide=Lus10023281 locus=Lus10023281.g ID=Lus10023281.BGIv1.0 annot-version=v1.0 MDSSLPSTMAHFTDGGDRTTTTISPKRDISARWREFHGEGDWMAVDGDGLLSPLHPCLRREIIKYGELAVATYEGFDFDPLSEYCGSCKFNYNKFLQELG LENKHGYKATRHIYALSHVDVPDWVSRIFPMWDKDSNWMGYVAVSNDQESKRIGRRDIVVAWRGTVAPTEWFINLKVKLFRVNDVKKVKVQKGFHSIYTS KDESKKYNKCSASEQVMDELVWLVERYRNKNKEEISITITGHSLGGALALLTADEAATRFPGVFISVISFGAPRVGNLAFREQLTKKLGVKVLRVIVDQD IVPELPGPIVDIIVKEVWPGMRTKWKKLTNEVVGVVAGQDIVADLRGTSYTSFRDKSRFAQSSFNFFRFHIAASFGMSKFGNQFYHPPERHDGTGRNSVH AWHLRRSYNAQL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30370		DLAH	DAD1-like acylhydrolase, alpha...		Lus10023281 [exp]	0	1
AT5G02320	MYB	MYB3R-5, ATMYB3...	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10008010 [exp]	2.0	0.9395
AT1G72100			late embryogenesis abundant do...		Lus10000723 [exp]	2.8	0.9360
AT1G27180			disease resistance protein (TI...		Lus10040576 [exp]	2.8	0.8837
					Lus10036703 [exp]	3.9	0.9338
AT5G14490	NAC	ANAC085	NAC domain containing protein ...		Lus10003668 [exp]	4.0	0.9219
					Lus10000348 [exp]	4.5	0.8933
AT1G25440	CO	COL16	B-box type zinc finger protein...		Lus10034322 [exp]	5.2	0.8837
					Lus10024939 [exp]	6.5	0.8388
AT1G02660			alpha/beta-Hydrolases superfam...		Lus10010031 [exp]	7.5	0.8849
AT1G49230			RING/U-box superfamily protein...		Lus10005814 [exp]	8.4	0.8040

Compare expression of checked genes

Lus10023281 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.