Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30370 86 / 5e-20 DLAH DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) AT4G16820 47 / 9e-07 PLA-I{beta]2 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) AT2G30550 41 / 0.0001 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G06800 40 / 0.0002 PLA-I{gamma}1 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038526 [exp] 181 / 4e-55 AT1G30370 539 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10023280 [exp] 174 / 2e-52 AT1G30370 537 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10038524 [exp] 94 / 3e-23 AT1G30370 526 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10015521 [exp] 87 / 1e-20 AT1G30370 524 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10023281 [exp] 76 / 8e-17 AT1G30370 342 / 2e-113 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10004364 [exp] 51 / 7e-08 AT4G16820 587 / 0.0 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) Lus10040158 [exp] 50 / 9e-08 AT4G16820 573 / 0.0 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) Lus10010997 [exp] 49 / 2e-07 AT4G16820 551 / 0.0 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) Lus10025519 [exp] 46 / 4e-06 AT2G31690 468 / 3e-162 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G263200 [exp] 110 / 5e-29 AT1G30370 607 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Potri.009G057900 [exp] 106 / 2e-27 AT1G30370 626 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Potri.001G153100 [exp] 50 / 7e-08 AT4G16820 575 / 0.0 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) Potri.003G081500 [exp] 48 / 4e-07 AT4G16820 558 / 0.0 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) Potri.005G218500 [exp] 47 / 8e-07 AT1G06800 652 / 0.0 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2) Potri.002G044700 [exp] 47 / 1e-06 AT1G06800 662 / 0.0 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2) Potri.014G150700 [exp] 46 / 2e-06 AT2G31690 491 / 7e-172 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G231600 [exp] 42 / 6e-05 AT1G05800 524 / 0.0 DONGLE, alpha/beta-Hydrolases superfamily protein (.1) Potri.009G051900 [exp] 40 / 0.0004 AT1G51440 700 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G054600 [exp] 39 / 0.0006 AT4G18550 384 / 1e-131 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023282 pacid=23180931 polypeptide=Lus10023282 locus=Lus10023282.g ID=Lus10023282.BGIv1.0 annot-version=v1.0 ATGGATTCCTCACCGTCGCCGTTAAGCCGGCAAGCCGTCACCGTCAAGTCTCCCTTCCACCAAACTAGGAGAAGAAGCATTAAGGTCTGGAAGATGAAGA TCAAAGCCAAGTGGCGCTCTTTCACATCCGCATTCTCCCGCAGATTCAAAAGGAGCCGTCTGCACCTCATCCGACGGCAATCACTCCCGCGCCGACGAGA CAAAACAAACGAGAACAAACCCCTAGGAAACAATAACAGTACCCGCCCGCACAAGTCGCTGGCGAAACTCCTCGAGGTTCCGTACTCCGCCTCGGATTTC ATCGATTGGGGGGACCGGATGACTCCAACAATATCCCCCAAGAGGGATATTTCGTCGCATTGGCGGGAGTTTCACGGAGAAGGTGATTGGACCGGCGATC TCCTCAGTCCGCTTCACCCCTGCCTCCGCCGTGAGATTGTCAAGTACGGCTAG
AA sequence Show only first row Show all	>Lus10023282 pacid=23180931 polypeptide=Lus10023282 locus=Lus10023282.g ID=Lus10023282.BGIv1.0 annot-version=v1.0 MDSSPSPLSRQAVTVKSPFHQTRRRSIKVWKMKIKAKWRSFTSAFSRRFKRSRLHLIRRQSLPRRRDKTNENKPLGNNNSTRPHKSLAKLLEVPYSASDF IDWGDRMTPTISPKRDISSHWREFHGEGDWTGDLLSPLHPCLRREIVKYG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30370		DLAH	DAD1-like acylhydrolase, alpha...		Lus10023282 [exp]	0	1
AT1G30370		DLAH	DAD1-like acylhydrolase, alpha...		Lus10038524 [exp]	2.0	0.9693
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10041145 [exp]	2.6	0.9700
AT1G51760		JR3, IAR3	JASMONIC ACID RESPONSIVE 3, IA...		Lus10030828 [exp]	3.0	0.9584
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Lus10028378 [exp]	15.6	0.9553
AT2G02010		GAD4	glutamate decarboxylase 4 (.1)		Lus10019136 [exp]	18.7	0.9295
AT1G20870			HSP20-like chaperones superfam...		Lus10018368 [exp]	19.1	0.9417
AT2G32030			Acyl-CoA N-acyltransferases (N...		Lus10010570 [exp]	21.9	0.9483
AT1G21326			VQ motif-containing protein (....		Lus10029768 [exp]	23.2	0.9165
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10039493 [exp]	28.5	0.9229
AT1G30370		DLAH	DAD1-like acylhydrolase, alpha...		Lus10015521 [exp]	28.5	0.9491

Compare expression of checked genes

Lus10023282 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.