Plant FIBer expression Database

Lus10023283 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G34640 546 / 0 HMR, PTAC12 HEMERA, plastid transcriptionally active 12 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038523
[exp]
889 / 0 AT2G34640 585 / 0.0 HEMERA, plastid transcriptionally active 12 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G358400
[exp]
618 / 0 AT2G34640 608 / 0.0 HEMERA, plastid transcriptionally active 12 (.1)
PFAM info
Representative CDS sequence
>Lus10023283 pacid=23181026 polypeptide=Lus10023283 locus=Lus10023283.g ID=Lus10023283.BGIv1.0 annot-version=v1.0
ATGGCTTCACTACAAGCAAACTGGCTCTATCAAGGTCAAACTTCCATATCCGATCGAGGATTGAGGATACCAATCTCTTCTAACCGTTTCCGGACGCAGC
TTCAATCCGGCGTTTCTCGAAAGCCTCGGTCACTTCCTCGCCTGAAGTGCGAGAGCGAGGACGAAGAGAAAGGGATTGAGCATATATACGTGGAGCGAGC
TCCTTACCACAGTTATCTGGACTCGACTTCTGGCCAAATCGAGCCGGCGTCCGGTGCTCGTGCCAGTATTCCTGGAGAAGAGTTATGGCCTGAAGGCACT
TTAGATAGAGTCAGGGCAGCTAGGGCTCCGGAGCCGACGGGGATATCAACCGGATCTCCGTCTTACGGCCAAAATCCTGGAAGTAGGAGGAAGCACCGGG
GATCGGCAGCGGGTTCGGATTCCGGTGAAGTGATTGAAATGGAAGCCGGTTTGGAGACTGAAAGCATTGAGGTGGAGGAAGAGGCGAGAGATGAATCATC
GGATTACGTGATTTATGAGGCGGATGAAGACGAGGAAGAGCTCACGGGGTTTGAGCTGGACAAGAAGTTGGGACGGCCTCATCCGTTTATTGATCCGAAG
GTGCAGAAGCCGATTGAAGGGATACTTCCTGAGGAAGAACTGTGGTGGAATTGGAAGAGGGATGATAGCGAACAATGGAGCAGGTGGCAAAGGAGGAAGC
CTGATTCTGAAACTGTGTTCCTCAAAGCAATGGCTGATAATGGGGATGTAAAACTTTATGGTGAGCATCCTACGTTGACTGAGACTGCTCTTTACCGATC
AAGGAAGCATCTTTATAAGGAAGAAAGGCTTCAAGCTGAGCGAGAGAGACTGGAAAGAATAGGCCCGCTGGCATTTTATTCGGAGTGGGTGAAGAAATGG
AATAGAGATACTTCACGGGAAGCTGTACAGAAGCATTATGAAGAGACTGGAGAAGATGAAACCTTCCAACTAATGGAAATGTTCAGCTACCAAACAGATA
GAGAGTACCGTATAATGATGGGCACTGATGTTCGGATCAAGAGGGATCCTTTAGCTATGCGGCTTCGGGAAGATCAAATAAAGCAAATTGAATCGAATCT
GGTACTATATGTGTTTAGATTGCGTAGGATCAGAGAAGGAACAGAACTGAGGGAGTGTCTGAATTATGTTGCTGCAATTTGTTTGCTCTTGTTGGTGACG
CTTATCCTGGCTGGTGCAGTTTGGGGTGGAGATCCAGTTTACCCGACGATCAACTACAAGCAAGACCCAAACGAGATTATTGATTTCAGGGGTCCAGATT
TTCATGAGCCAACACCAAATATGGATGCGTACCTGAAAGAGATAGGAGTACTCGTAACTGAAGATGAATTTGAAGAAAGTATAGGAAAAGTGAAGACTGA
AGAAGTCGATCAAACGACGGACATGGATGAAGCCATGGCACGAGCAGTCGACATTGGAGAACTTGACGACGGAGAGGATAGTGACGGTAAAGAGAAAGAA
AAGGTTGATGAAGACAATGTGCAGCGTAATTGGAGCGTCTTGAAGACTACTCCCGAACTGCGGAAATCCAAGCCTAAACCCAAGAAGGACGGTGCGATGA
CTCTGGATGAGGCCGTGGATGACTCTGAGAACTTGACCGACTTTCTCATGGACTTCGACCAAGATTGA
AA sequence
>Lus10023283 pacid=23181026 polypeptide=Lus10023283 locus=Lus10023283.g ID=Lus10023283.BGIv1.0 annot-version=v1.0
MASLQANWLYQGQTSISDRGLRIPISSNRFRTQLQSGVSRKPRSLPRLKCESEDEEKGIEHIYVERAPYHSYLDSTSGQIEPASGARASIPGEELWPEGT
LDRVRAARAPEPTGISTGSPSYGQNPGSRRKHRGSAAGSDSGEVIEMEAGLETESIEVEEEARDESSDYVIYEADEDEEELTGFELDKKLGRPHPFIDPK
VQKPIEGILPEEELWWNWKRDDSEQWSRWQRRKPDSETVFLKAMADNGDVKLYGEHPTLTETALYRSRKHLYKEERLQAERERLERIGPLAFYSEWVKKW
NRDTSREAVQKHYEETGEDETFQLMEMFSYQTDREYRIMMGTDVRIKRDPLAMRLREDQIKQIESNLVLYVFRLRRIREGTELRECLNYVAAICLLLLVT
LILAGAVWGGDPVYPTINYKQDPNEIIDFRGPDFHEPTPNMDAYLKEIGVLVTEDEFEESIGKVKTEEVDQTTDMDEAMARAVDIGELDDGEDSDGKEKE
KVDEDNVQRNWSVLKTTPELRKSKPKPKKDGAMTLDEAVDDSENLTDFLMDFDQD

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G34640 HMR, PTAC12 HEMERA, plastid transcriptiona... Lus10023283
[exp]
0 1
AT2G32230 PRORP1 proteinaceous RNase P 1 (.1) Lus10039049
[exp]
1.0 0.9393
AT2G34640 HMR, PTAC12 HEMERA, plastid transcriptiona... Lus10038523
[exp]
1.4 0.9372
AT3G06730 TRXz, TRXP ,TRX... thioredoxin putative plastidic... Lus10039499
[exp]
3.9 0.9345
AT1G02560 NCLPP5, NCLPP1,... NUCLEAR CLPP 5, NUCLEAR-ENCODE... Lus10001450
[exp]
4.5 0.9327
AT5G17990 PAT1, TRP1 PHOSPHORIBOSYLANTHRANILATE TRA... Lus10018054
[exp]
5.7 0.8929
AT3G18110 EMB1270 embryo defective 1270, Pentatr... Lus10039148
[exp]
6.3 0.8967
AT4G20130 PTAC14 plastid transcriptionally acti... Lus10006942
[exp]
8.1 0.9229
AT1G48520 GATB GLU-ADT subunit B (.1.2.3) Lus10030559
[exp]
12.2 0.8932
AT5G18570 EMB3138, ATOBGL... EMBRYO DEFECTIVE 3138, EMBRYO ... Lus10024297
[exp]
13.9 0.9220
AT2G04530 CPZ, TRZ2 TRNASE Z 2, Metallo-hydrolase/... Lus10033809
[exp]
14.4 0.8823

Lus10023283 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.