Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30320 239 / 1e-72 Remorin family protein (.1) AT2G02170 119 / 1e-28 Remorin family protein (.1.2) AT1G67590 79 / 6e-16 Remorin family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038521 [exp] 454 / 6e-160 AT1G30320 128 / 4e-34 Remorin family protein (.1) Lus10038522 [exp] 236 / 1e-74 AT1G30320 296 / 2e-98 Remorin family protein (.1) Lus10015817 [exp] 61 / 8e-10 AT1G67590 280 / 5e-92 Remorin family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G358600 [exp] 305 / 2e-97 AT1G30320 448 / 2e-153 Remorin family protein (.1) Potri.010G098000 [exp] 140 / 8e-36 AT2G02170 434 / 2e-148 Remorin family protein (.1.2) Potri.008G144300 [exp] 110 / 1e-25 AT2G02170 431 / 5e-147 Remorin family protein (.1.2) Potri.008G178300 [exp] 81 / 2e-16 AT1G67590 306 / 1e-102 Remorin family protein (.1.2) Potri.010G056800 [exp] 80 / 5e-16 AT1G67590 253 / 8e-82 Remorin family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03763 [flax] [poplar] Remorin_C Remorin, C-terminal region
Representative CDS sequence Show only first row Show all	>Lus10023284 pacid=23181013 polypeptide=Lus10023284 locus=Lus10023284.g ID=Lus10023284.BGIv1.0 annot-version=v1.0 ATGGAGTACGAGCGGATACACAAAGTACAGAGTGGAATCATATCTCCGAGTAAACTGAGGATGAAGCTAATGGGACCTCACCACCAAGTGAGAAGACAAC AAGAAGAAGCTTCTAATTCCACTTCTTCGCCAACTTCTCCTTCTTCCAGAGTTGTTGATGATGATGCCACTGATTTTGTTCGCAGCAGCTTGCTCGACTC CAACATTGCAGATCTCGTCCATGAGGTTGGGGATGATTCTTCCTCAGAAGTGACTCATCAGCTGCAAAATAGCAGCAACGATTTGGATCATGCTAAGATG CAGCATCAGCTGTTGAGATCTGAGAGTGTGAACTCAAATGCTGTGCAGCACAACTTGATGAGGGTAGTAGGATCAGAAGATGAGAATCCAGGGTACGACA GCTCGTCGAGCTTCGAGTTCCAGAAGGAGAGATCATATCATCATAATCACCATCATCATCAGTTCACAAGGTCATTGTCAAGGCCTATGTCATCCAAGTG GAATGATGCTGAGAAATGGATAATCAACAAGCAAAATGTGGTACCGAGGAAGAATGGCTTCTTAAACAACCAGGGTAGTAATCATAATCGGATGGGTCGG GTTGCTCCCGAACTAGTAGCAACCAGTACTACTAAGCTTGTAGACTTCTGCCAGACTAATGGTTCACAAGTTGGATTCGAGAGTTCTTCTTCCTTTATTG CACCTGGAACTCCTTCCCTCTCCGGCCAACCCCACGGAGGGTTGGATTTGAAGGAGGTGGATCAAGCTGTAGTATCTACAAAGAGTTTGACTGAAGACCG AACAGTGGTTCCTGTCATTAGATCAGTTTGTATGAGAGACATGGGAACAGAAATGACACCCATTGCTAGTCAAGAGCCCTCGAGAACCGGTACACCAGTT GGGGCGACAACTCCGATTCGCAGCCCTACTTCGTCAATGCCCTCCACCCCGAGAGCAGGTGGACCCGCACCTACGCCAACAACGGACGAAGATGGGAATT GCAAAAAGGAACTGAGTGAGGAAGAGCTGAAACTGAAGACTAGGAAGGAGATTGTAGCTCTCGGGGTGAAGCTTGGGAAGATGAACATTGCTGCTTGGGC AAGTAAAGACGAGGAGGAGGAAAAGAACATTGCTTTTAGTGCAAGAAGAGAAAGGGAGTCGCTTGAGCAGATTGAATTGGAGAAGCGGGCAGCTGCTTGG GAAGAAGCTGAGAAGTCTAAACACAGTGCAAGATACAAAAGGGAAGAGATACAAATCCAAACATGGGAAAGTCAGCAGATAGCAAAGCTAGAAGCGGAGT TGCGAAGAACTGAGGCTCGAGCGGAGCGAATGCGAGTGGAAGCTGAAGCAAAGATGGTTAAGAAGATGGCAATGGCAAGGCAAAGAGCAGAGGAGAGACG CGGAGCAGCTGAGTTGAGGAAGAATCGAGATGCAGAGAGAACAGCAGTGAAAGCTGAATACATACGCCAAACTGGTCGGATGCCCTCGAGTTTGATGCAT TACATATGCTGTGGCTGGTTGTGA
AA sequence Show only first row Show all	>Lus10023284 pacid=23181013 polypeptide=Lus10023284 locus=Lus10023284.g ID=Lus10023284.BGIv1.0 annot-version=v1.0 MEYERIHKVQSGIISPSKLRMKLMGPHHQVRRQQEEASNSTSSPTSPSSRVVDDDATDFVRSSLLDSNIADLVHEVGDDSSSEVTHQLQNSSNDLDHAKM QHQLLRSESVNSNAVQHNLMRVVGSEDENPGYDSSSSFEFQKERSYHHNHHHHQFTRSLSRPMSSKWNDAEKWIINKQNVVPRKNGFLNNQGSNHNRMGR VAPELVATSTTKLVDFCQTNGSQVGFESSSSFIAPGTPSLSGQPHGGLDLKEVDQAVVSTKSLTEDRTVVPVIRSVCMRDMGTEMTPIASQEPSRTGTPV GATTPIRSPTSSMPSTPRAGGPAPTPTTDEDGNCKKELSEEELKLKTRKEIVALGVKLGKMNIAAWASKDEEEEKNIAFSARRERESLEQIELEKRAAAW EEAEKSKHSARYKREEIQIQTWESQQIAKLEAELRRTEARAERMRVEAEAKMVKKMAMARQRAEERRGAAELRKNRDAERTAVKAEYIRQTGRMPSSLMH YICCGWL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30320			Remorin family protein (.1)		Lus10023284 [exp]	0	1
AT2G39420			alpha/beta-Hydrolases superfam...		Lus10023448 [exp]	1.4	0.9326
AT4G10810			unknown protein		Lus10010114 [exp]	8.1	0.9047
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10014359 [exp]	10.1	0.9318
AT1G04880	ARID		HMG (high mobility group) box ...		Lus10016671 [exp]	16.9	0.8778
					Lus10034993 [exp]	20.3	0.8801
AT2G27990	HD	PNF, BLH8	POUND-FOOLISH, BEL1-like homeo...		Lus10040256 [exp]	20.3	0.9304
AT3G19500	bHLH	bHLH113	basic helix-loop-helix (bHLH) ...		Lus10013874 [exp]	25.7	0.9250
AT4G22320			unknown protein		Lus10032566 [exp]	29.0	0.8660
AT1G31310	Trihelix		hydroxyproline-rich glycoprote...		Lus10040629 [exp]	29.2	0.9246
AT5G02030	HD	PNY, BLR, BLH9,...	VAAMANA, REPLUMLESS, PENNYWISE...		Lus10004688 [exp]	33.3	0.9206

Compare expression of checked genes

Lus10023284 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.