Plant FIBer expression Database

Lus10023285 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038520
[exp]
431 / 2e-154 ND /
Lus10002102
[exp]
82 / 2e-19 ND /
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G081701
[exp]
221 / 1e-70 ND /
PFAM info
Representative CDS sequence
>Lus10023285 pacid=23180918 polypeptide=Lus10023285 locus=Lus10023285.g ID=Lus10023285.BGIv1.0 annot-version=v1.0
ATGGCGTGTTTTCTTCCTTTGAATAACAAGAGCCTGGAGATCAGCTTCATCGCCCTCCGGCCGACCGTCGTCATCGTCGATGATGCCGTCGATGCTCTCA
AGCATTTCTCTTCCGCCACTGTCGATATGGGCTGCGTCGTCAATTGCATCCTCAAGAGCATCCACGGCAACATCATCCTGTGGTATGGAGCCTGGAGTAA
GAAATCCTCTCAGAACAAACACCTCCTTACTGCTTCCATTGAATCCAAGCTGGCAAAGATGCTGTCCGGAAAGGCAATAGTGACGGAGCTCGGCTTCTAC
GACGCATACGCCGGAGAAACCAAAGACGGCCGCTCGTCCACCGCCGCCAGATTCTCCACCGGAGACGCCGTCTCCATGTGCGTAGTGGTCCCCAAACCGG
TGGGACCCGCGGCGGGGGCTAAATGCGGCGCCTCCTACGACGACTTGTCGTACGCGAATTTGGCGCTGTTCCGATCCAAATTCTCGACGATGAAAGGCGC
GTCTGCCGGAGTCTGCTTGGGGTGCCCCACCTTGCCTCGATTGGCGTGCTTCTACGTCTGGACTTCTTTGCGCGCGTGCTACTCGTGGCTTCTCGACTCC
GATGGCCGGACCAGCGCCGATGGACTCGGCCTCGACGTCAAGTACGACATTTTCACGGTGGCTTCCGTTTGCGATGAGTGGAGTCGGTTACCCGAACCGG
AACCGTGGAGTCGGTACCCCGAACCGGACCCCACTCGGTGGTTCGGTTCGGATGTGGTGGAACCCACTCGGTGGGTCGATTCGGATGCGGTAGTAGCCAA
GAAAAATCAACGTTCTCTTTGA
AA sequence
>Lus10023285 pacid=23180918 polypeptide=Lus10023285 locus=Lus10023285.g ID=Lus10023285.BGIv1.0 annot-version=v1.0
MACFLPLNNKSLEISFIALRPTVVIVDDAVDALKHFSSATVDMGCVVNCILKSIHGNIILWYGAWSKKSSQNKHLLTASIESKLAKMLSGKAIVTELGFY
DAYAGETKDGRSSTAARFSTGDAVSMCVVVPKPVGPAAGAKCGASYDDLSYANLALFRSKFSTMKGASAGVCLGCPTLPRLACFYVWTSLRACYSWLLDS
DGRTSADGLGLDVKYDIFTVASVCDEWSRLPEPEPWSRYPEPDPTRWFGSDVVEPTRWVDSDAVVAKKNQRSL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10023285
[exp]
0 1
AT2G23450 Protein kinase superfamily pro... Lus10000741
[exp]
3.7 0.8290
AT1G55190 PRA7, PRA1.F2 PRENYLATED RAB ACCEPTOR 1.F2, ... Lus10008598
[exp]
3.7 0.7993
AT4G24290 MAC/Perforin domain-containing... Lus10015324
[exp]
4.0 0.8010
AT4G37420 Domain of unknown function (DU... Lus10030740
[exp]
8.5 0.8000
AT3G11820 PEN1, AT-SYR1, ... PENETRATION1, SYNTAXIN RELATED... Lus10016173
[exp]
9.3 0.8072
AT1G15520 ATABCG40, ABCG4... Arabidopsis thaliana ATP-bindi... Lus10041683
[exp]
9.5 0.8003
AT3G51030 ATTRX1, ATTRXH1 ARABIDOPSIS THALIANA THIOREDOX... Lus10024293
[exp]
12.0 0.7661
Lus10039654
[exp]
12.2 0.7610
AT4G32790 Exostosin family protein (.1) Lus10000608
[exp]
12.7 0.7843
AT4G28703 RmlC-like cupins superfamily p... Lus10014252
[exp]
19.8 0.7639

Lus10023285 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.