Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30300 521 / 0 Metallo-hydrolase/oxidoreductase superfamily protein (.1) AT4G03610 393 / 5e-138 Metallo-hydrolase/oxidoreductase superfamily protein (.1.2) AT3G13800 201 / 7e-62 Metallo-hydrolase/oxidoreductase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038519 [exp] 379 / 5e-133 AT1G30300 323 / 3e-111 Metallo-hydrolase/oxidoreductase superfamily protein (.1) Lus10004844 [exp] 201 / 3e-62 AT3G13800 530 / 0.0 Metallo-hydrolase/oxidoreductase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G081600 [exp] 513 / 0 AT1G30300 506 / 0.0 Metallo-hydrolase/oxidoreductase superfamily protein (.1) Potri.003G036800 [exp] 197 / 3e-60 AT3G13800 515 / 0.0 Metallo-hydrolase/oxidoreductase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0381 [flax] [poplar] Metallo-HOrase PF00753 [flax] [poplar] Lactamase_B Metallo-beta-lactamase superfamily
Representative CDS sequence Show only first row Show all	>Lus10023286 pacid=23181062 polypeptide=Lus10023286 locus=Lus10023286.g ID=Lus10023286.BGIv1.0 annot-version=v1.0 ATGGACAACGGCAATGCTCTTAACGGCTCATCCAGCAATGGATCGGCCCTCATTTTTCTCGGCACTGGATGTTCCAGCGCCATCCCCAATATAATGTGCC TGATCCAGCCTTCCGATCCTCCCTGTCGTGTTTGCTCTCAGGCGCTCTCGATCCCGCCGGACCAAAACCCTAATTACAGGTGCAATACTTCTCTTCTCAT AGATTACTGTCCCGGGGGAGACGGGAAGCACAGTTATATATTGATTGATGTTGGGAAGACGTTTAGGGAGCAAGTTCTTCGGTGGTTCACTTTCCATAAG ATTCCTCGGGTTGATTCTATAATCTTGACACATGAACATGCTGATGCAGTCCTTGGCCTTGATGATGTACGGACCGTGCAGCCATTCAGTCCAATAAACG CTATTGACCCAACTCCGATTTTTCTGAGTGGACATGCTATGGAAAGCATTGCAGTGAAATTCCCTTACTTGGTACAGAAGAAATTGAAGGAAGGCCAAGA AATAAGACGAGTGGCACAGCTGGACTGGACAATTATTGAGGAAGACTGTCAGAAACCGTTTGTTGCTTCTGGCCTACAAATTTTTCCTTTGCCAGTAATG CATGGAGAAGATTATGTCTGTTTAGGATTTCTCTTTGGTGAAAAGTATAAAGTAGCTTACTTATCTGATGTTTCAAGGTTTCCTGAGAAAACAGAATTCG AAATTTCAAAATCTGGGGCAGGCCAGCTTGATCTTCTCATCTTGGATGCTTTATACAAGAAAGGACCTCACAATACCCATTTTTGCCTCCCAGAGTCTCT TGAAGCAGTGAAGAGATTATGCCCCAAAAGGGCTCTTTTGATTGGAATGACTCATGAGCTTGATCATAACAAGGACGGTGAATATTTAGAAGAGTGGTCT AAAAGGGAAGGAATACCAGTACAGTTTGCACACGATGGGTTAAGAGTCCCCGTAGACTTGTGA
AA sequence Show only first row Show all	>Lus10023286 pacid=23181062 polypeptide=Lus10023286 locus=Lus10023286.g ID=Lus10023286.BGIv1.0 annot-version=v1.0 MDNGNALNGSSSNGSALIFLGTGCSSAIPNIMCLIQPSDPPCRVCSQALSIPPDQNPNYRCNTSLLIDYCPGGDGKHSYILIDVGKTFREQVLRWFTFHK IPRVDSIILTHEHADAVLGLDDVRTVQPFSPINAIDPTPIFLSGHAMESIAVKFPYLVQKKLKEGQEIRRVAQLDWTIIEEDCQKPFVASGLQIFPLPVM HGEDYVCLGFLFGEKYKVAYLSDVSRFPEKTEFEISKSGAGQLDLLILDALYKKGPHNTHFCLPESLEAVKRLCPKRALLIGMTHELDHNKDGEYLEEWS KREGIPVQFAHDGLRVPVDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30300			Metallo-hydrolase/oxidoreducta...		Lus10023286 [exp]	0	1
AT2G42320			nucleolar protein gar2-related...		Lus10040502 [exp]	2.8	0.8529
AT3G25040		ERD2B	endoplasmic reticulum retentio...		Lus10011846 [exp]	3.0	0.8574
AT1G04990	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10015156 [exp]	3.2	0.8449
AT5G01460			LMBR1-like membrane protein (....		Lus10027794 [exp]	6.7	0.8519
AT1G78570		ATRHM1, RHM1, R...	REPRESSOR OF LRX1 1, ARABIDOPS...		Lus10013695 [exp]	12.3	0.8476
AT5G62690		TUB2	tubulin beta chain 2 (.1)		Lus10035497 [exp]	13.4	0.8298
AT4G22910		CCS52A1, FZR2	cell cycle switch protein 52 ...		Lus10001192 [exp]	13.6	0.7884
AT5G62690		TUB2	tubulin beta chain 2 (.1)		Lus10002000 [exp]	15.0	0.8322
AT1G05170			Galactosyltransferase family p...		Lus10015107 [exp]	16.2	0.8259
AT5G55960			unknown protein		Lus10022565 [exp]	20.4	0.7880

Compare expression of checked genes

Lus10023286 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.