Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34630 520 / 0 GPPS, GPS1 GERANYLPYROPHOSPHATE SYNTHASE, geranyl diphosphate synthase 1 (.1.2) AT1G17050 221 / 3e-68 SPS2 solanesyl diphosphate synthase 2 (.1) AT1G78510 209 / 3e-64 SPS1 solanesyl diphosphate synthase 1 (.1.2) AT4G36810 91 / 7e-20 GGPS1 geranylgeranyl pyrophosphate synthase 1 (.1) AT2G18620 83 / 2e-17 Terpenoid synthases superfamily protein (.1) AT2G23800 78 / 1e-15 GGPS5, GGPS2 GERANYLGERANYL PYROPHOSPHATE SYNTHASE 5, geranylgeranyl pyrophosphate synthase 2 (.1) AT3G20160 77 / 2e-15 Terpenoid synthases superfamily protein (.1) AT2G18640 75 / 1e-14 GGPS4 geranylgeranyl pyrophosphate synthase 4 (.1) AT3G14510 71 / 1e-13 Polyprenyl synthetase family protein (.1) AT1G49530 67 / 3e-12 GGPS6 geranylgeranyl pyrophosphate synthase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005570 [exp] 231 / 6e-72 AT1G78510 564 / 0.0 solanesyl diphosphate synthase 1 (.1.2) Lus10013703 [exp] 229 / 5e-69 AT1G78510 542 / 0.0 solanesyl diphosphate synthase 1 (.1.2) Lus10042491 [exp] 221 / 7e-68 AT1G17050 548 / 0.0 solanesyl diphosphate synthase 2 (.1) Lus10016803 [exp] 89 / 3e-19 AT4G36810 488 / 2e-173 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10022499 [exp] 84 / 1e-17 AT4G36810 491 / 8e-175 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10028509 [exp] 83 / 3e-17 AT4G36810 437 / 2e-153 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10033582 [exp] 71 / 8e-14 AT4G36810 305 / 6e-104 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10028508 [exp] 70 / 7e-13 AT4G36810 380 / 9e-132 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10017624 [exp] 70 / 1e-12 AT4G36810 439 / 5e-153 geranylgeranyl pyrophosphate synthase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G138800 [exp] 555 / 0 AT2G34630 551 / 0.0 GERANYLPYROPHOSPHATE SYNTHASE, geranyl diphosphate synthase 1 (.1.2) Potri.006G135300 [exp] 553 / 0 AT2G34630 592 / 0.0 GERANYLPYROPHOSPHATE SYNTHASE, geranyl diphosphate synthase 1 (.1.2) Potri.001G380500 [exp] 231 / 9e-72 AT1G78510 597 / 0.0 solanesyl diphosphate synthase 1 (.1.2) Potri.011G099500 [exp] 176 / 3e-51 AT1G78510 415 / 8e-144 solanesyl diphosphate synthase 1 (.1.2) Potri.011G101301 [exp] 176 / 4e-51 AT1G17050 427 / 2e-148 solanesyl diphosphate synthase 2 (.1) Potri.011G101200 [exp] 155 / 1e-43 AT1G17050 397 / 2e-137 solanesyl diphosphate synthase 2 (.1) Potri.005G127100 [exp] 98 / 2e-22 AT4G36810 444 / 2e-156 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.007G031100 [exp] 97 / 3e-22 AT4G36810 467 / 1e-165 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.004G090600 [exp] 86 / 2e-18 AT4G36810 419 / 1e-146 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.017G124700 [exp] 82 / 5e-17 AT4G36810 413 / 1e-144 geranylgeranyl pyrophosphate synthase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0613 [flax] [poplar] Terp_synthase PF00348 [flax] [poplar] polyprenyl_synt Polyprenyl synthetase
Representative CDS sequence Show only first row Show all	>Lus10023287 pacid=23180970 polypeptide=Lus10023287 locus=Lus10023287.g ID=Lus10023287.BGIv1.0 annot-version=v1.0 ATGGCTTTACGCATCAGATACATCATCAGAGCACTTCCTTGGTTGAGGTATTCATCTTGTTTGCCAGCGTCTCAGTTTTACCAAGTTTCAGTGACTGGTA TGCTGATGAAGGAACAACTTGATCCATTTACAATTGTTGCTGATGAGTTATCACATCTATCTAATAAATTGCGGGAAATGGTAGTTGCTGAGGTTCCAAA GCTTGCCTCAGCTGCTGAATACTTTTTTAAATTTGGAGTGGAAGGAAAGAGATTCCGTCCAACGGATCCCGTGTTGGTTTGTGATACTGAACAAGTGGAG AGTTTTGTCATGCAGGTTTTGTTGCTGATGGCAACAGCTCTGAATGTGCACTTACCTATACCCAATAGTCTTCCGGTGTCCACAGAGCTACGTGCAAGGC AGCAACGCATAGCTGAGATTACAGAGATGATTCATGTAGCAAGTCTTCTTCACGATGATGTCTTAGACGATGCAGACACAAGACGCGGAATTAAGTCATT AAATCTTGTTATGGGCAATAAGGTTGCAGTGCTAGCTGGGGATTTTCTACTTTCAAGAGCTTGTGTAGCCTTAGCTTCTTTGAGAAACACTGAGGTCGTT TCACTGCTAGCAACGGTTGTGGAGCATCTTGTAACTGGTGAAACCATGCAGATGACTACTACATCTGAGCAACGTTGTAGCATGGAGTATTACATGCAAA AGACATACTATAAGACTGCATCTCTGATTTCTAATAGCTGCAAGGCAGTTGCCCTTCTTGCCGGGCAAACCACCGAAGTTGCAACTTTGGCTTTCGAGTA TGGAAGGAATCTGGGTTTGGCCTTTCAGTTGATAGATGATGTTCTTGATTTCACTGGCACGGCTGCTTCCCTTGGCAAAGGATCATTGTCCGACATACGT CACGGAATCGTAACTGCTCCAATACTGTATGCCATGGAAGAATTCCCCCAGATGCGTTCCCTAATCGACCAGGGATTCGAGGATCCTAAAAACGTGAACC TTGCTCTGGAGTACCTCGGAAATAGCCGCGGAATAGAGAGGACAAGAGAACTGGCGGCTAAACATGCTAGCCTTGCTGCAGAAGCTATTGATTCCTTACC GGAAACTGACAGCGAGGAGGTGATGAAGTCGAGGCGGGCTTTGATAGACATCACTCGGAGAGTAATCACCAGAAACAAGTAA
AA sequence Show only first row Show all	>Lus10023287 pacid=23180970 polypeptide=Lus10023287 locus=Lus10023287.g ID=Lus10023287.BGIv1.0 annot-version=v1.0 MALRIRYIIRALPWLRYSSCLPASQFYQVSVTGMLMKEQLDPFTIVADELSHLSNKLREMVVAEVPKLASAAEYFFKFGVEGKRFRPTDPVLVCDTEQVE SFVMQVLLLMATALNVHLPIPNSLPVSTELRARQQRIAEITEMIHVASLLHDDVLDDADTRRGIKSLNLVMGNKVAVLAGDFLLSRACVALASLRNTEVV SLLATVVEHLVTGETMQMTTTSEQRCSMEYYMQKTYYKTASLISNSCKAVALLAGQTTEVATLAFEYGRNLGLAFQLIDDVLDFTGTAASLGKGSLSDIR HGIVTAPILYAMEEFPQMRSLIDQGFEDPKNVNLALEYLGNSRGIERTRELAAKHASLAAEAIDSLPETDSEEVMKSRRALIDITRRVITRNK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34630		GPPS, GPS1	GERANYLPYROPHOSPHATE SYNTHASE,...		Lus10023287 [exp]	0	1
AT1G51980			Insulinase (Peptidase family M...		Lus10025839 [exp]	15.4	0.6539
AT4G14950		KMS1	Killing Me Slowly 1, SNARE ass...		Lus10004916 [exp]	21.0	0.6457
AT3G47570			Leucine-rich repeat protein ki...		Lus10030638 [exp]	35.1	0.6334
AT5G03160		ATP58IPK	homolog of mamallian P58IPK (....		Lus10019928 [exp]	69.3	0.5956

Compare expression of checked genes

Lus10023287 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.