Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17210 827 / 0 ATILP1 ARABIDOPSIS IAP-LIKE PROTEIN, IAP-like protein 1 (.1) AT1G48950 208 / 3e-57 C3HC zinc finger-like (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038518 [exp] 1771 / 0 AT1G17210 855 / 0.0 ARABIDOPSIS IAP-LIKE PROTEIN, IAP-like protein 1 (.1) Lus10027238 [exp] 211 / 7e-58 AT1G48950 489 / 8e-167 C3HC zinc finger-like (.1) Lus10038947 [exp] 210 / 9e-58 AT1G48950 487 / 2e-166 C3HC zinc finger-like (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G081200 [exp] 1274 / 0 AT1G17210 905 / 0.0 ARABIDOPSIS IAP-LIKE PROTEIN, IAP-like protein 1 (.1) Potri.015G052400 [exp] 209 / 2e-56 AT1G48950 409 / 2e-133 C3HC zinc finger-like (.1) Potri.012G058550 [exp] 56 / 1e-07 AT1G48950 159 / 1e-42 C3HC zinc finger-like (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0417 [flax] [poplar] BIR-like PF07967 [flax] [poplar] zf-C3HC C3HC zinc finger-like
Representative CDS sequence Show only first row Show all	>Lus10023288 pacid=23180964 polypeptide=Lus10023288 locus=Lus10023288.g ID=Lus10023288.BGIv1.0 annot-version=v1.0 ATGAAGGAAGAAGCTATCAGCTCCGCAGGAACCGTGGATCCCACTCCTGCAGCTGCAAGTTCTGCTGGGGCATCCTCACGTGCTGGACCTGTCAGTGGTG GCAAAAAGGAGAAATCCAGCAATGCTTTTGATTCCAAGTTTGCTTCTTTGACCGGCATGGGTTCAAAACTTCCTGAAACCTCTAATCTTGGGTCAGCAAG ACTTTCATGCAGGCCATGGGAAAGAGGCGATTTGTTAAGGCGGTTAGCTACATTTAAACCATCAAGTTGGTATGGAAAACCTAAGGCTACTAGTTCGTTG GCATGTGCTCAAAGAGGTTGGACGAATGTTGATGTTGACAAAATTGTCTGTGAATCCTGTGGTGCATCTCTGAGTTTTCTGTTGCTGCCGTCATGGACCA ATACTGAAGTTCAAGATGCTGAAGAAGCCTTTGCAAAGCAGTTGGATACTGGCCATGAAGTGAACTGCCCTTGGAGAGGACATAGCTGCCTAGAAAGCTT AGTGCAGTTCCCGCCTACTCCACAGTCTGCTTTGATCGGTGGATACAAGGACAGATGCGATGGACTTCTGCAATTTCAGTTACTTCCTATTGTTGCTGCA TCTGCAGTCGAGTTGATGCGTGTCTCGCGAGGTCCACTCATAGATCGTTTTTTATCCCAGTCCCAAAATCTTACCATCGGAGAAGATCAAAAGCCAGAAA ACATTCAGGAACCTGTAGATGGACCTCTCTATCTATATTATCGGGCCCAAAGGCTTATCAGTCTTTGTGGATGGGAACCAAGATGGCTTGCAATTGTTCA GGACTGTGAAGAACATTCTGCTCAGTCTGCTCGAAATGCATGGTCTTTTGGGCCTGCTATGGCACAGGTCCATCCTTCACGTGGATTGAGCAATAAGTCA TATTCTGCTTCAGCCAGAAAAGACAATGGGAAGAGTAAAATGGTTGCTGCTGAGTCTATATGTGATTCTAGGTCACCTTTATTAGATTGCAGTTTATGTG GCGCCACCGTGAGAATACTTGATTTCCTGACGGTTTCTCGCCCTACACGTTTTGTTCCAAATGATCTTCCCGATGGAAGCAAAAAACTGACATTAACACG CGGAGTGAGTGCTGCAAGTGGAATTAGTGGTTGGGTTGCAGCTGATGATGCAGATAAAGAACAGACTGAAGATCGTGATGAAGTAGCTACCACAAATAAG GGAAAGTTGCCGCAGAATGCAGATGTTGATTTGAATCTCACAATGGCTGGGGGTCTTTCTTTTGTTCCGTTGGACAGGATGATGATGGGTGATAATAACC ATGATGTGGATTTGGGGAGAGATCTAATGATTGGTCAACCTGCTGGCAGTGAGGTTGGTGATCGTGCTGCTTCATTTGAGTCTCGGGGACCAAGTTCTCG GAAGAGGAGCTTGGAGATAGGTGGGAGCTCAGATAATAGGCCACATTTAATTCATCCAGCTGATAGTGTTGAAGGAACTGTCATTGATCGTGATGGCGAT GAAGTTACAGATGGGAGACAGTTTTCTGCCGGACCTTCAAAACGTGCTCGTGATACGGAATTTTTTGAGTCACACAGTTCATATCCAAGATACTCATCTG GTGCTGGTCCTAGTCATTCAGTTGGTATTGAAATTAATGTAGACGGAAACAGAGTTGGTTCTTTTCGTCGAAATACTGACCATGTTGGAGGAGCCCCATC TACTAGAGATTCAACACGTGCATCATCTGTCATTGCGATGGATACTGTTGGTAATGGAGATGATGACTCTATGGAAAGTGTTGAAAATTATCCAGGGGAT GTTGATGATGTTCATTTACCATCTTCAAGTACATATGGGAACATAGACATGAATGAAACTTCGGAACTGAACAATAGCAATCAGGCGCAGCTAAGTATTG GCTTCCGACCTGTCAATGAAGTGGCACGAGGGGAAATGGGTGTCAGTAGTACAAATGACGGTGATGACATTTTCAATGCTGAAACAGTAACTGCTCAGGC AAGGGATGGATTTAGTTTTGGGGTCAGTGGAGGTAGTGTTGGTATGTGTGCAAGCCATGAAGCTGAAATTCATGGAGCTGATTTCTCAGTTCATAGAGTG GAGAGTGTAGTCGGTGACATGGAACCCAGAGGGGATGATGTTGAAAACCAAGGTCAGACTGGTGAGTCAGCCCCTGATCCTGGTCTAATGGATGAGGTTG TTCCCGATGATGTGAACAGGGAAGATCCTCATGGGGATAACCAGGAGTTGCTCTCCAGATCTGTTGAAAGGGCTGATAGTGGCTCAAAAATAGATTGTTC AACTAAGGCAGACTCTGTTGGAAGTGGAGAAAAGGCAAGCAGGAGCGGTAAGATATTAACAGGAGAAAATGCCCATCCTTCTCTTTCTTGCAATGCAGTC ATTGATTCTGGTTGTGGAACACCCCTTAACACGGGTAAAAAGACTGGAAATTCCTCATCAACAAACAACGGTACTTGCATGGAATCAGACTATGCAGTTG CCAATGGTATAGATCCTCCAAAGGGTGAAAGCAACTATGAGGAGCCAATGGAGTTCGATCCAATTATTCACCACAATGTATTCTGTCCATGGGTGAATGG AAACGTTGCTGCTGCTGGCGTCAGTAGCTCTGGATCTGGAGGTAGTATTGACACGGAAGCGTTGTGTGGGTGGCAGCTCACTTTGGATGCTCTGGATGCA TTTGGATCATTGGCTAATTATGCAATTCAAACAGGACAGTCTGAATCAGCAGCATCTTTGTACAAGGATGATAATCAAACTCCTGGGCAAAAGCTTATTC GACGGCATTCTATGAGCAGAAGCCATGGTCAGCAATGA
AA sequence Show only first row Show all	>Lus10023288 pacid=23180964 polypeptide=Lus10023288 locus=Lus10023288.g ID=Lus10023288.BGIv1.0 annot-version=v1.0 MKEEAISSAGTVDPTPAAASSAGASSRAGPVSGGKKEKSSNAFDSKFASLTGMGSKLPETSNLGSARLSCRPWERGDLLRRLATFKPSSWYGKPKATSSL ACAQRGWTNVDVDKIVCESCGASLSFLLLPSWTNTEVQDAEEAFAKQLDTGHEVNCPWRGHSCLESLVQFPPTPQSALIGGYKDRCDGLLQFQLLPIVAA SAVELMRVSRGPLIDRFLSQSQNLTIGEDQKPENIQEPVDGPLYLYYRAQRLISLCGWEPRWLAIVQDCEEHSAQSARNAWSFGPAMAQVHPSRGLSNKS YSASARKDNGKSKMVAAESICDSRSPLLDCSLCGATVRILDFLTVSRPTRFVPNDLPDGSKKLTLTRGVSAASGISGWVAADDADKEQTEDRDEVATTNK GKLPQNADVDLNLTMAGGLSFVPLDRMMMGDNNHDVDLGRDLMIGQPAGSEVGDRAASFESRGPSSRKRSLEIGGSSDNRPHLIHPADSVEGTVIDRDGD EVTDGRQFSAGPSKRARDTEFFESHSSYPRYSSGAGPSHSVGIEINVDGNRVGSFRRNTDHVGGAPSTRDSTRASSVIAMDTVGNGDDDSMESVENYPGD VDDVHLPSSSTYGNIDMNETSELNNSNQAQLSIGFRPVNEVARGEMGVSSTNDGDDIFNAETVTAQARDGFSFGVSGGSVGMCASHEAEIHGADFSVHRV ESVVGDMEPRGDDVENQGQTGESAPDPGLMDEVVPDDVNREDPHGDNQELLSRSVERADSGSKIDCSTKADSVGSGEKASRSGKILTGENAHPSLSCNAV IDSGCGTPLNTGKKTGNSSSTNNGTCMESDYAVANGIDPPKGESNYEEPMEFDPIIHHNVFCPWVNGNVAAAGVSSSGSGGSIDTEALCGWQLTLDALDA FGSLANYAIQTGQSESAASLYKDDNQTPGQKLIRRHSMSRSHGQQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17210		ATILP1	ARABIDOPSIS IAP-LIKE PROTEIN, ...		Lus10023288 [exp]	0	1
AT3G46960			RNA helicase, ATP-dependent, S...		Lus10017528 [exp]	1.4	0.9579
AT1G54490		ATXRN4, XRN4, E...	ETHYLENE INSENSITIVE 5, ACC IN...		Lus10015946 [exp]	2.0	0.9448
AT3G01460		MBD9, ATMBD9	methyl-CPG-binding domain 9 (....		Lus10030625 [exp]	5.1	0.9082
AT4G24270		EMB140	EMBRYO DEFECTIVE 140 (.1.2)		Lus10005168 [exp]	5.7	0.9315
AT1G06230		GTE4	global transcription factor gr...		Lus10033624 [exp]	5.9	0.9315
AT5G47690			binding (.1.2.3)		Lus10038777 [exp]	7.5	0.9381
AT2G01210			Leucine-rich repeat protein ki...		Lus10034108 [exp]	8.7	0.9009
AT1G80680		NUP96, SAR3, MO...	PRECOCIOUS, MODIFIER OF SNC1,3...		Lus10040555 [exp]	8.9	0.9028
AT2G03150		EMB1579	embryo defective 1579, ATP/GTP...		Lus10030445 [exp]	9.6	0.8953
AT1G06230		GTE4	global transcription factor gr...		Lus10033623 [exp]	9.9	0.9106

Compare expression of checked genes

Lus10023288 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.