Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46150 460 / 2e-163 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.1), LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.2) AT1G54320 393 / 6e-137 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.1) AT1G16360 388 / 3e-135 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.1) AT3G12740 387 / 1e-134 ALIS1 ALA-interacting subunit 1 (.1) AT1G79450 387 / 1e-134 ALIS5 ALA-interacting subunit 5 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038516 [exp] 669 / 0 AT5G46150 491 / 9e-176 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.1), LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.2) Lus10001762 [exp] 395 / 8e-138 AT1G54320 527 / 0.0 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.1) Lus10033283 [exp] 375 / 7e-130 AT1G79450 447 / 3e-158 ALA-interacting subunit 5 (.1.2) Lus10034744 [exp] 374 / 7e-129 AT3G12740 427 / 3e-150 ALA-interacting subunit 1 (.1) Lus10001834 [exp] 357 / 8e-123 AT1G54320 471 / 1e-167 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G082100 [exp] 469 / 2e-167 AT5G46150 456 / 4e-162 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.1), LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.2) Potri.017G139300 [exp] 407 / 2e-142 AT3G12740 437 / 5e-154 ALA-interacting subunit 1 (.1) Potri.004G081100 [exp] 399 / 4e-139 AT1G79450 429 / 4e-151 ALA-interacting subunit 5 (.1.2) Potri.010G173900 [exp] 390 / 5e-136 AT3G12740 512 / 0.0 ALA-interacting subunit 1 (.1) Potri.008G082100 [exp] 377 / 1e-130 AT3G12740 479 / 6e-171 ALA-interacting subunit 1 (.1) Potri.001G381500 [exp] 334 / 2e-113 AT1G79450 398 / 2e-138 ALA-interacting subunit 5 (.1.2) Potri.001G337466 [exp] 50 / 3e-08 AT1G16360 50 / 7e-09 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03381 [flax] [poplar] CDC50 LEM3 (ligand-effect modulator 3) family / CDC50 family
Representative CDS sequence Show only first row Show all	>Lus10023290 pacid=23181070 polypeptide=Lus10023290 locus=Lus10023290.g ID=Lus10023290.BGIv1.0 annot-version=v1.0 ATGGAAGTTGAAGGAGTAAATGCCTCGGATGATTCCGCCTCTGTCCGATCGATTCCTATACAGTCAGGCCGACGGAAAGCTTTTCAGCAGTTCACACAGC AGACTCTCCCAGCTTGTAAGCCTGTCCTGACTCCAGCATGGGTGATGACATCATTTTTATTGTTGGGACTTACTTTTGTGCCTGTTGGATTCGTCACTCT TCGTACCTCCCGTACTGTCGTTGAAATTGTGGAACAGTATGATGCAGACTGTGTTCCAGAGGCATATAAAGGCAACCAGATGTCGTATATTACTGACCGT TCTATTCCAAAGAATTGTTCCAGGAAATTGAAAGTGCACAAGTATATGAAAGCCCCAATTTACGTTTACTATCAACTTGACAATTACTATCAAAACCACC GACGGTATGTCAAGAGTAGAAGTGATCAGCAACTTCTGCACGGATTACAAACGAACGATACAAGTGCTTGTAGACCCGAAGAGTCTATGGATAATGGCCA TATTGTCCCGTGTGGATTGATTGCATGGAGTTTGTTCAATGACACATACACATTTTCCAGCGAGGACTCGAAACTAAAAGTCAACCGGAAGAACATCGCT TGGAAAAGTGATCGATACCACAAGTTTGGAAAGGATGTGTATCCTTCCAACTTCCAAAATGGGACTATCATTGGTGGTGGAAAGCTTGATCCAAAGATTC CTCTAAGTGATCAAGAGGATCTGATTGTATGGATGCGAACCGCAGCCCTTCCCAGCTTCAGAAAGATGTACGGGCGAATTGAAGAGGATTTAGACGTGGA TGATGTTATTACTGTGGATCTGATGAACAATTATAACACGTACAGCTTTGGTGGGAAGAAGAAGCTCGTTCTTTCGACATCGAGCTGGTTGGGAGGAAGG AATGACTTCATGGGATTTGCATTCATGTTTGTTGGCTCGTCGTCCATATTCCTATCCATGGTGTTCATGCTTCTTCATGTCAAAAGCCCCAGGACTTATG GAGACGTAGCTTACTTGTCCTGGAAAAAGGGCAATTCTGGTTGA
AA sequence Show only first row Show all	>Lus10023290 pacid=23181070 polypeptide=Lus10023290 locus=Lus10023290.g ID=Lus10023290.BGIv1.0 annot-version=v1.0 MEVEGVNASDDSASVRSIPIQSGRRKAFQQFTQQTLPACKPVLTPAWVMTSFLLLGLTFVPVGFVTLRTSRTVVEIVEQYDADCVPEAYKGNQMSYITDR SIPKNCSRKLKVHKYMKAPIYVYYQLDNYYQNHRRYVKSRSDQQLLHGLQTNDTSACRPEESMDNGHIVPCGLIAWSLFNDTYTFSSEDSKLKVNRKNIA WKSDRYHKFGKDVYPSNFQNGTIIGGGKLDPKIPLSDQEDLIVWMRTAALPSFRKMYGRIEEDLDVDDVITVDLMNNYNTYSFGGKKKLVLSTSSWLGGR NDFMGFAFMFVGSSSIFLSMVFMLLHVKSPRTYGDVAYLSWKKGNSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46150			LEM3 (ligand-effect modulator ...		Lus10023290 [exp]	0	1
AT4G34280			transducin family protein / WD...		Lus10026603 [exp]	9.7	0.8665
AT3G54850		ATPUB14	plant U-box 14 (.1)		Lus10038699 [exp]	12.6	0.8092
AT4G34280			transducin family protein / WD...		Lus10013890 [exp]	13.2	0.8431
AT5G62570			Calmodulin binding protein-lik...		Lus10043463 [exp]	23.0	0.8457
AT5G27320		ATGID1C, GID1C	GA INSENSITIVE DWARF1C, alpha/...		Lus10018963 [exp]	27.6	0.8359
AT3G20920			translocation protein-related ...		Lus10014906 [exp]	29.2	0.8041
AT2G36960	MYB	TKI1	TSL-kinase interacting protein...		Lus10013816 [exp]	32.6	0.8228
AT1G05410			Protein of unknown function (D...		Lus10021915 [exp]	37.3	0.8183
AT4G28220		NDB1	NAD(P)H dehydrogenase B1 (.1)		Lus10039769 [exp]	40.5	0.8276
AT5G62610	bHLH	bHLH079	basic helix-loop-helix (bHLH) ...		Lus10036659 [exp]	48.2	0.8218

Compare expression of checked genes

Lus10023290 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.