Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72280 655 / 0 AERO1 endoplasmic reticulum oxidoreductins 1 (.1) AT2G38960 629 / 0 AERO2 endoplasmic reticulum oxidoreductins 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038515 [exp] 901 / 0 AT1G72280 656 / 0.0 endoplasmic reticulum oxidoreductins 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G436100 [exp] 675 / 0 AT1G72280 630 / 0.0 endoplasmic reticulum oxidoreductins 1 (.1) Potri.011G139900 [exp] 666 / 0 AT1G72280 635 / 0.0 endoplasmic reticulum oxidoreductins 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04137 [flax] [poplar] ERO1 Endoplasmic Reticulum Oxidoreductin 1 (ERO1)
Representative CDS sequence Show only first row Show all	>Lus10023292 pacid=23180940 polypeptide=Lus10023292 locus=Lus10023292.g ID=Lus10023292.BGIv1.0 annot-version=v1.0 ATGGGGGATTCAAAGGCTGATACCACCAAGAGTAAGAGCGATGGTGGCCGTCGGTGGGCGGTGTTCTTTGCTCTCTCTGTACTGTTCCTCGCTCTTGCTG CTGCTTCAACTGCCACCCCCAAGATCTCTCTCTTTGGAAAAGTCAATAAGCTCTGCACCTGTTCTTCCCGTCAGAAATATACTGGGATTGTGGAAGATTG TTGTTGCAACTATGAGACAGCTAACCTTCTGAACGAGGAAGTGTTGTATCCGTCTCTCCAGGAGCTCGTCAAAACCCCATTCTTCCGCTATTTCAAGGCT AAATTGTGGTGTGATTGTCCTTTCTGGGCTGATGATGGAATGTGCCGATTGAGGGATTGCAGTGTATGTGAATGCCCTGATAATGAGTTCCCGGAATCAT TTAAGCCGCCTTTTGGCCGTGGTCTTCCATCAGATGATCTTATCTGTCAAGAAGGAAAGCCGGAGGCTGCTGTTGATCGTACCCTTGATCGTAAAGCTTT TAGGGGTTGGACAGAGACTGATAACCCCTGGACAAATGATGATGAGACTGACAATGCTGAGATGACATATGTGAATCTTCAACTGAATCCTGAACGCTAT ACTGGGTACACTGGTCCATCAGCTAGAAGAATATGGGATGCGGTGTACTCTGAGAACTGCCCCAAATATCCATCTGAAGAGCAGTGCCAAGAGGAGAGAT TGCTGTATAAATTGATTTCCGGTCTCCACTCTTCCATCTCTGTCCATATAGCTGCTGATTACCTGCTTGATGAAGAGACAAACTCGTGGGGTGAGAATTT GACTTTGATGTATGATAGAGTCTTGAGATATCCAGAACGCGTTCGAAACTTGTACTTCACTTATCTCTTTGTTCTGCGATCTGTCATGAAGACAGCAAGT TACTTAGAACAAGCAGAGTATGACACCGGTAACCCTACCGAGGACCTAAAGGCTCATTCGTTGATCAAGCAGCTGCTCTATAATACAAAACTCGAAGCTG CTTGCCCACTTCCGTTTGATGAAGCCAAACTTTGGAAAGGGCAACGAGGACCTGAACTGAAACAGAAGATTCAAGAACAGTTCAGAAACATAAGTGCATT AATGGACTGCGTCGGGTGTGAGAAGTGTCGACTCTGGGGAAAGCTCCAGGTTCTTGGCCTTGGCACAGCATTGAAGATACTGTTCTCCGATAATGGTGAA GAAACATCTATCCAAACATTGCAGTTACAGCGAAATGAAGTAATTGCACTGATCAATCTACTGAACCGGCTATCAGAATCGGTGAAGTTCGTCCATGAAA AGGGAGCGGCTGTAGAAAGAATCATGGAGGGACAGAGGGGTTTGTTAGGTGCTGCAAGTATTCTGTTGCAGAAAGTGTGGCCATTAACATGA
AA sequence Show only first row Show all	>Lus10023292 pacid=23180940 polypeptide=Lus10023292 locus=Lus10023292.g ID=Lus10023292.BGIv1.0 annot-version=v1.0 MGDSKADTTKSKSDGGRRWAVFFALSVLFLALAAASTATPKISLFGKVNKLCTCSSRQKYTGIVEDCCCNYETANLLNEEVLYPSLQELVKTPFFRYFKA KLWCDCPFWADDGMCRLRDCSVCECPDNEFPESFKPPFGRGLPSDDLICQEGKPEAAVDRTLDRKAFRGWTETDNPWTNDDETDNAEMTYVNLQLNPERY TGYTGPSARRIWDAVYSENCPKYPSEEQCQEERLLYKLISGLHSSISVHIAADYLLDEETNSWGENLTLMYDRVLRYPERVRNLYFTYLFVLRSVMKTAS YLEQAEYDTGNPTEDLKAHSLIKQLLYNTKLEAACPLPFDEAKLWKGQRGPELKQKIQEQFRNISALMDCVGCEKCRLWGKLQVLGLGTALKILFSDNGE ETSIQTLQLQRNEVIALINLLNRLSESVKFVHEKGAAVERIMEGQRGLLGAASILLQKVWPLT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72280		AERO1	endoplasmic reticulum oxidored...		Lus10023292 [exp]	0	1
AT4G25150			HAD superfamily, subfamily III...		Lus10007939 [exp]	2.8	0.8577
AT1G60710		ATB2	NAD(P)-linked oxidoreductase s...		Lus10041272 [exp]	5.1	0.8572
AT3G09010			Protein kinase superfamily pro...		Lus10011193 [exp]	7.3	0.8546
AT1G21450	GRAS	SCL1	SCARECROW-like 1 (.1)		Lus10042776 [exp]	7.3	0.8461
AT2G27510		ATFD3	ferredoxin 3 (.1)		Lus10043430 [exp]	7.9	0.7916
AT1G63290			Aldolase-type TIM barrel famil...		Lus10032052 [exp]	12.6	0.8480
AT4G28400			Protein phosphatase 2C family ...		Lus10039853 [exp]	16.6	0.8306
AT2G29050		ATRBL1	RHOMBOID-like 1 (.1.2)		Lus10023789 [exp]	17.9	0.8470
AT3G52880		ATMDAR1	monodehydroascorbate reductase...		Lus10008633 [exp]	18.5	0.8393
AT1G28420	HD	HB-1	homeobox-1 (.1)		Lus10015400 [exp]	20.5	0.8195

Compare expression of checked genes

Lus10023292 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.