Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023293 [exp] 125 / 3e-38 AT1G22590 48 / 2e-07 AGAMOUS-like 87 (.1.2) Lus10000974 [exp] 77 / 7e-19 AT5G26650 93 / 3e-24 AGAMOUS-like 36 (.1) Lus10028653 [exp] 66 / 1e-14 AT1G22590 91 / 2e-23 AGAMOUS-like 87 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G201700 [exp] 43 / 1e-05 AT5G48670 120 / 2e-30 AGAMOUS-like 80 (.1) Potri.016G068132 [exp] 42 / 3e-05 AT5G48670 125 / 1e-34 AGAMOUS-like 80 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023294 pacid=23180915 polypeptide=Lus10023294 locus=Lus10023294.g ID=Lus10023294.BGIv1.0 annot-version=v1.0 ATGGCGAGGAGAAATGTGAAGCTTGAGTTCATCACCGATGAAGCTACACGAAAAAAGACTTTTAAGAAGAAGAAAAACGAAATATGGAATGAATTGCAGG AGATGACAGCTCTGTATGGAGTCTGCGCTTCCGTAATCCTCTTCCACAACTTCGCCGAAAATGGCGAAGATGATGAGCCAAAGATGGAAGTTTGGCCATC TGTCCCGAAAGCTATGGACTTGTTGGCTAAATACAAGGAAGAGCTGAAGATCACTGCGAAGAAGAAGAAGAAGAAGAAGAATCTACAGCAGCTGCGCGAG AAGTTGGTAGCTCTGCGTGAAAAGGTTGCTGAGCGGAATGAGTGA
AA sequence Show only first row Show all	>Lus10023294 pacid=23180915 polypeptide=Lus10023294 locus=Lus10023294.g ID=Lus10023294.BGIv1.0 annot-version=v1.0 MARRNVKLEFITDEATRKKTFKKKKNEIWNELQEMTALYGVCASVILFHNFAENGEDDEPKMEVWPSVPKAMDLLAKYKEELKITAKKKKKKKNLQQLRE KLVALREKVAERNE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22590	MADS	AGL87	AGAMOUS-like 87 (.1.2)		Lus10023294 [exp]	0	1
AT3G52610			unknown protein		Lus10014215 [exp]	1.0	0.9990
AT2G42840		PDF1	protodermal factor 1 (.1)		Lus10007351 [exp]	3.0	0.9909
AT2G40010			Ribosomal protein L10 family p...		Lus10040214 [exp]	3.2	0.9922
AT2G40010			Ribosomal protein L10 family p...		Lus10028276 [exp]	4.9	0.9884
AT3G22590		PHP, CDC73	PLANT HOMOLOGOUS TO PARAFIBROM...		Lus10026680 [exp]	5.7	0.9819
AT5G51800	Trihelix		Protein kinase superfamily pro...		Lus10031672 [exp]	6.3	0.9858
AT1G71691			GDSL-like Lipase/Acylhydrolase...		Lus10009455 [exp]	6.9	0.9680
AT5G61120			unknown protein		Lus10035396 [exp]	7.2	0.9677
AT5G53950	NAC	ATCUC2, CUC2, A...	CUP-SHAPED COTYLEDON 2, Arabid...		Lus10041924 [exp]	7.3	0.9790
AT2G27040		OCP11, AGO4	OVEREXPRESSOR OF CATIONIC PERO...		Lus10043291 [exp]	7.9	0.9823

Compare expression of checked genes

Lus10023294 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.