Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14070 96 / 3e-26 ROXY2 Thioredoxin superfamily protein (.1) AT3G02000 85 / 5e-22 ROXY1 Thioredoxin superfamily protein (.1) AT1G28480 80 / 5e-20 roxy19, GRX480 Thioredoxin superfamily protein (.1) AT1G03850 73 / 3e-17 ATGRXS13 glutaredoxin 13, Glutaredoxin family protein (.1.2) AT3G21460 71 / 1e-16 Glutaredoxin family protein (.1) AT4G15700 67 / 4e-15 Thioredoxin superfamily protein (.1) AT4G15660 67 / 4e-15 Thioredoxin superfamily protein (.1) AT4G15670 67 / 4e-15 Thioredoxin superfamily protein (.1) AT4G15690 66 / 5e-15 Thioredoxin superfamily protein (.1) AT4G15680 65 / 2e-14 Thioredoxin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038514 [exp] 164 / 3e-53 AT5G14070 122 / 2e-36 Thioredoxin superfamily protein (.1) Lus10041538 [exp] 96 / 3e-26 AT5G14070 134 / 3e-41 Thioredoxin superfamily protein (.1) Lus10035183 [exp] 96 / 4e-26 AT5G14070 148 / 6e-47 Thioredoxin superfamily protein (.1) Lus10011333 [exp] 91 / 6e-24 AT5G14070 151 / 1e-47 Thioredoxin superfamily protein (.1) Lus10013962 [exp] 82 / 9e-21 AT1G28480 135 / 3e-42 Thioredoxin superfamily protein (.1) Lus10039867 [exp] 74 / 2e-17 AT1G28480 127 / 7e-39 Thioredoxin superfamily protein (.1) Lus10018631 [exp] 71 / 1e-16 AT1G28480 127 / 8e-39 Thioredoxin superfamily protein (.1) Lus10033965 [exp] 70 / 3e-16 AT5G18600 148 / 5e-48 Thioredoxin superfamily protein (.1) Lus10002887 [exp] 67 / 2e-15 AT4G15690 149 / 3e-48 Thioredoxin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G325800 [exp] 99 / 2e-27 AT3G02000 155 / 6e-50 Thioredoxin superfamily protein (.1) Potri.003G167000 [exp] 95 / 6e-26 AT5G14070 150 / 9e-48 Thioredoxin superfamily protein (.1) Potri.001G060600 [exp] 94 / 2e-25 AT5G14070 147 / 1e-46 Thioredoxin superfamily protein (.1) Potri.017G017300 [exp] 80 / 1e-19 AT1G28480 132 / 3e-40 Thioredoxin superfamily protein (.1) Potri.004G049800 [exp] 79 / 3e-19 AT1G28480 94 / 2e-25 Thioredoxin superfamily protein (.1) Potri.007G134800 [exp] 79 / 3e-19 AT1G28480 141 / 9e-44 Thioredoxin superfamily protein (.1) Potri.011G058800 [exp] 76 / 2e-18 AT1G28480 102 / 2e-28 Thioredoxin superfamily protein (.1) Potri.008G214500 [exp] 71 / 1e-16 AT3G21460 177 / 2e-59 Glutaredoxin family protein (.1) Potri.010G021800 [exp] 67 / 2e-15 AT5G18600 163 / 5e-54 Thioredoxin superfamily protein (.1) Potri.014G133800 [exp] 66 / 5e-15 AT1G03020 142 / 1e-45 Thioredoxin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00462 [flax] [poplar] Glutaredoxin Glutaredoxin
Representative CDS sequence Show only first row Show all	>Lus10023295 pacid=23181079 polypeptide=Lus10023295 locus=Lus10023295.g ID=Lus10023295.BGIv1.0 annot-version=v1.0 ATGGCGGCAGCGGCAAACAGCGTGGCGGCGGAAAACGGCGGCGGGTCAACGACAACGTTGGAGAAGAATCACTTTGGCGGCGCGTACGAAGTGGTGGGAG AGGTAGCGAGGAGCAACGCGGTGGTGGTGTTCAGCATGAGCGGCTGCTGCATGTGCACGGTGGTCAAGCGGCTCCTCTTCGGGCTCGGAGTGGGGCCCAC GATTGTTGAGCTTGACCACCTTCCTAATTCTTCTGATGACATCCAGGCCGTCCTTGTGGGTCTCCATGGATCCAACGGTGGTGGTGTTGGTGGTGGCACC GTGCCGGCGGTTTTTGTTGGAGGGAAGTTCGTCGGTGGGATTGAGAGGCTGATGGCTTGCCATATCAATGGGTCCTTGGTGCCTCTTCTCAAGGATGCTG GTGCTCTCTGGCTTTGA
AA sequence Show only first row Show all	>Lus10023295 pacid=23181079 polypeptide=Lus10023295 locus=Lus10023295.g ID=Lus10023295.BGIv1.0 annot-version=v1.0 MAAAANSVAAENGGGSTTTLEKNHFGGAYEVVGEVARSNAVVVFSMSGCCMCTVVKRLLFGLGVGPTIVELDHLPNSSDDIQAVLVGLHGSNGGGVGGGT VPAVFVGGKFVGGIERLMACHINGSLVPLLKDAGALWL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14070		ROXY2	Thioredoxin superfamily protei...		Lus10023295 [exp]	0	1
AT3G09510			Ribonuclease H-like superfamil...		Lus10000349 [exp]	1.7	0.9522
AT2G47940		EMB3117, DEGP2	EMBRYO DEFECTIVE 3117, DEGP pr...		Lus10005931 [exp]	2.2	0.9585
AT2G42800		AtRLP29	receptor like protein 29 (.1)		Lus10010946 [exp]	2.4	0.9581
AT5G13150		ATEXO70C1	exocyst subunit exo70 family p...		Lus10011334 [exp]	5.0	0.9347
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10013915 [exp]	6.3	0.9227
AT2G35160		SGD9, SUVH5	SET DOMAIN-CONTAINING PROTEIN ...		Lus10032528 [exp]	7.7	0.9492
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10039303 [exp]	8.9	0.9069
					Lus10007141 [exp]	12.7	0.9002
AT5G11550			ARM repeat superfamily protein...		Lus10011691 [exp]	13.3	0.9245
AT5G47500		PME5	pectin methylesterase 5, Pecti...		Lus10004720 [exp]	13.3	0.9112

Compare expression of checked genes

Lus10023295 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.