Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46160 193 / 3e-62 Ribosomal protein L14p/L23e family protein (.1.2) AT1G17560 148 / 3e-44 HLL HUELLENLOS, Ribosomal protein L14p/L23e family protein (.1) ATCG00780 103 / 4e-28 ATCG00780.1, RPL14 ribosomal protein L14 (.1) AT3G04400 40 / 0.0002 EMB2171 embryo defective 2171, Ribosomal protein L14p/L23e family protein (.1.2) AT2G33370 40 / 0.0003 Ribosomal protein L14p/L23e family protein (.1) AT1G04480 40 / 0.0003 Ribosomal protein L14p/L23e family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038513 [exp] 248 / 6e-84 AT5G46160 249 / 6e-86 Ribosomal protein L14p/L23e family protein (.1.2) Lus10022881 [exp] 43 / 8e-05 AT1G04480 270 / 1e-94 Ribosomal protein L14p/L23e family protein (.1) Lus10024943 [exp] 42 / 0.0002 AT1G04480 270 / 2e-94 Ribosomal protein L14p/L23e family protein (.1) Lus10012464 [exp] 40 / 0.0002 AT3G04400 251 / 6e-88 embryo defective 2171, Ribosomal protein L14p/L23e family protein (.1.2) Lus10020499 [exp] 40 / 0.0002 AT1G04480 251 / 6e-88 Ribosomal protein L14p/L23e family protein (.1) Lus10011773 [exp] 41 / 0.0003 AT2G33370 270 / 2e-94 Ribosomal protein L14p/L23e family protein (.1) Lus10042695 [exp] 40 / 0.0003 AT2G33370 273 / 8e-96 Ribosomal protein L14p/L23e family protein (.1) Lus10023730 [exp] 40 / 0.0004 AT2G33370 278 / 3e-98 Ribosomal protein L14p/L23e family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G022800 [exp] 199 / 1e-64 AT5G46160 199 / 3e-66 Ribosomal protein L14p/L23e family protein (.1.2) Potri.003G096525 [exp] 56 / 3e-10 AT5G46160 62 / 5e-13 Ribosomal protein L14p/L23e family protein (.1.2) Potri.008G171200 [exp] 40 / 0.0003 AT3G04400 278 / 3e-98 embryo defective 2171, Ribosomal protein L14p/L23e family protein (.1.2) Potri.010G066400 [exp] 40 / 0.0003 AT3G04400 278 / 3e-98 embryo defective 2171, Ribosomal protein L14p/L23e family protein (.1.2) Potri.002G257500 [exp] 40 / 0.0003 AT3G04400 278 / 3e-98 embryo defective 2171, Ribosomal protein L14p/L23e family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00238 [flax] [poplar] Ribosomal_L14 Ribosomal protein L14p/L23e
Representative CDS sequence Show only first row Show all	>Lus10023296 pacid=23180944 polypeptide=Lus10023296 locus=Lus10023296.g ID=Lus10023296.BGIv1.0 annot-version=v1.0 ATGTACATGGATTTCCCATTTAGTGGTCTCACCAGCCACCCCAGGCTAATGGGACCAATTATGGGTGCGACTTCACTACTTGGGTTCACTTATTCGTTCT CCGTTCTCGTGTCTGCGACGACGAGTCGGCTTGCTCCCTTTTCCCCTCACCGGCCGACGATCACCATCCACCGTAATTTCATTCATTTCGTCGTCCCTGA GAATTCTCTTCCACTTGTAATCGTGAGGAAATGGCCGCCAGTTTTGCTTCCAGATGTTCTCGTGCTATATCTAATTGCAGCGGGTCGGTCGCTGTTTGGG GGACTCGGCAACAGCATCTCTAGTGCAGCAAGCACATCATCAGAGATGACTTCCAGCAATTTCCTGTATCGGCTCCAGCAAAACAGGACTTTCATACAAA TGAGGACAGTCCTGAAAGTCGCGGATAATTCTGGTGCAAAAAAGGTGATGTGCATACAAGTGCTGAAGGGGAAGAAGATAGGGGCTAAGCTAGGGGACAC AATCGTGGCTTCGGTGAAAGAAGCGATGCCCAACGGTAAAGTCAAGAAAGGGAAAGTTGTGTACGGTGTGGTAGTCCGGGCTGCTATGCAGCGTGGACGT TGTGACGGGAGCGAGGTTAAGTTCGACGACAATGCTGTAGTTTTGGTCGACAAACAAGGCCAGCCGATCGGTACCAGAGTGTTCGGGCCTGTGCCGCACG AGCTCAGACAGAAGAAGCACGTCAAGATCCTCACTCTCGCTGAGCATATTGCCTGA
AA sequence Show only first row Show all	>Lus10023296 pacid=23180944 polypeptide=Lus10023296 locus=Lus10023296.g ID=Lus10023296.BGIv1.0 annot-version=v1.0 MYMDFPFSGLTSHPRLMGPIMGATSLLGFTYSFSVLVSATTSRLAPFSPHRPTITIHRNFIHFVVPENSLPLVIVRKWPPVLLPDVLVLYLIAAGRSLFG GLGNSISSAASTSSEMTSSNFLYRLQQNRTFIQMRTVLKVADNSGAKKVMCIQVLKGKKIGAKLGDTIVASVKEAMPNGKVKKGKVVYGVVVRAAMQRGR CDGSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELRQKKHVKILTLAEHIA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46160			Ribosomal protein L14p/L23e fa...		Lus10023296 [exp]	0	1
AT4G31460			Ribosomal L28 family (.1)		Lus10003683 [exp]	2.4	0.8033
AT2G09990			Ribosomal protein S5 domain 2-...		Lus10038012 [exp]	2.8	0.8366
AT5G27470			seryl-tRNA synthetase / serine...		Lus10017409 [exp]	4.6	0.8284
AT3G19130		ATRBP47B	RNA-binding protein 47B (.1)		Lus10014029 [exp]	4.6	0.8452
AT1G26750			unknown protein		Lus10016383 [exp]	6.3	0.8174
AT1G16740			Ribosomal protein L20 (.1)		Lus10006327 [exp]	7.7	0.7912
AT5G15220			Ribosomal protein L27 family p...		Lus10010822 [exp]	11.0	0.7405
AT4G26210			Mitochondrial ATP synthase sub...		Lus10040553 [exp]	12.8	0.7216
AT5G02960			Ribosomal protein S12/S23 fami...		Lus10023172 [exp]	16.2	0.7913
AT4G04614			unknown protein		Lus10014685 [exp]	17.3	0.7749

Compare expression of checked genes

Lus10023296 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.