Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18390 153 / 2e-42 TCP TCP2 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 (.1.2) AT1G30210 143 / 6e-39 TCP ATTCP24, TCP24 TEOSINTE BRANCHED 1, cycloidea, and PCF family 24 (.1.2) AT3G02150 116 / 1e-29 TCP TFPD, PTF1, TCP13 TEOSINTE BRANCHED1, CYCLOIDEA AND PCF TRANSCRIPTION FACTOR 13, plastid transcription factor 1 (.1.2) AT5G08070 110 / 1e-27 TCP TCP17 TCP domain protein 17 (.1) AT5G60970 112 / 2e-27 TCP TCP5 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 (.1) AT2G31070 105 / 6e-25 TCP TCP10 TCP domain protein 10 (.1) AT3G15030 100 / 4e-23 TCP TCP4, MEE35 maternal effect embryo arrest 35, TCP family transcription factor 4 (.1.2.3) AT1G53230 99 / 1e-22 TCP TCP3 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 (.1) AT1G67260 83 / 3e-17 TCP TCP1 TCP family transcription factor (.1.2) AT1G68800 75 / 1e-14 TCP TCP12, BRC2, TCP18 BRANCHED 2, TCP domain protein 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038512 [exp] 354 / 2e-117 AT4G18390 204 / 1e-60 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 (.1.2) Lus10017856 [exp] 115 / 1e-28 AT5G60970 175 / 6e-52 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 (.1) Lus10034679 [exp] 111 / 7e-27 AT5G60970 169 / 2e-49 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 (.1) Lus10000463 [exp] 103 / 5e-24 AT3G15030 224 / 1e-69 maternal effect embryo arrest 35, TCP family transcription factor 4 (.1.2.3) Lus10032984 [exp] 94 / 4e-21 AT3G02150 142 / 3e-40 TEOSINTE BRANCHED1, CYCLOIDEA AND PCF TRANSCRIPTION FACTOR 13, plastid transcription factor 1 (.1.2) Lus10035055 [exp] 81 / 7e-17 AT1G68800 102 / 7e-25 BRANCHED 2, TCP domain protein 12 (.1) Lus10021713 [exp] 81 / 1e-16 AT3G18550 107 / 2e-26 BRANCHED 1, TCP family transcription factor (.1.2) Lus10003078 [exp] 77 / 2e-15 AT1G67260 105 / 2e-25 TCP family transcription factor (.1.2) Lus10034072 [exp] 77 / 5e-15 AT1G67260 100 / 4e-23 TCP family transcription factor (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G065800 [exp] 204 / 3e-60 AT4G18390 151 / 2e-41 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 (.1.2) Potri.011G083100 [exp] 194 / 1e-56 AT4G18390 150 / 5e-41 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 (.1.2) Potri.017G094800 [exp] 114 / 3e-28 AT3G02150 161 / 4e-47 TEOSINTE BRANCHED1, CYCLOIDEA AND PCF TRANSCRIPTION FACTOR 13, plastid transcription factor 1 (.1.2) Potri.004G116100 [exp] 113 / 8e-28 AT3G02150 173 / 1e-50 TEOSINTE BRANCHED1, CYCLOIDEA AND PCF TRANSCRIPTION FACTOR 13, plastid transcription factor 1 (.1.2) Potri.015G058800 [exp] 108 / 4e-26 AT5G60970 177 / 6e-52 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 (.1) Potri.013G119400 [exp] 104 / 1e-24 AT3G15030 243 / 4e-77 maternal effect embryo arrest 35, TCP family transcription factor 4 (.1.2.3) Potri.019G091300 [exp] 103 / 3e-24 AT3G15030 227 / 5e-71 maternal effect embryo arrest 35, TCP family transcription factor 4 (.1.2.3) Potri.001G375800 [exp] 103 / 5e-24 AT1G53230 279 / 1e-90 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 (.1) Potri.011G096600 [exp] 103 / 8e-24 AT3G15030 262 / 7e-84 maternal effect embryo arrest 35, TCP family transcription factor 4 (.1.2.3) Potri.017G112000 [exp] 81 / 1e-16 AT1G67260 111 / 1e-27 TCP family transcription factor (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03634 [flax] [poplar] TCP TCP family transcription factor
Representative CDS sequence Show only first row Show all	>Lus10023297 pacid=23181061 polypeptide=Lus10023297 locus=Lus10023297.g ID=Lus10023297.BGIv1.0 annot-version=v1.0 ATGGAGGTGGAGGACCTTCATCAAACACAACCACCCAGCAAGTTCTCCAGAATCAGTAATGGCGGCCGAAGTGATAACAGCAAGATAGGAACCACAAACG GAGTCCTCGGAGTCGGTGGGGACAACAACCACCACCACCATCTCCGCCAATTCCAAGCGGATACTGAAGAAGAAGATGGTGGTGGTGAGATCAAGATGTC TCTTTGTAACACTCCCACCGGCGCTGGACCTATCGTCGCCGCCGAAGTTCCAGATGGCGCCACCGGTAATCGGCTCAGGGGATGGCACCACTCACGGATT ATTAGGGTTTCTAGGGCATCCGGCGGGAAAGATCGGCACAGTAAAGTCTGGACCTCAAAGGGTTTAAGAGACCGCCGTGTCCGGTTATCAGTCACCACCG CTATCCAATTCTACGATCTACAAGATAGATTGGGATACGACCAACCAAGTAAAGCTGTTGAATGGCTGATTAAAGCTGCTTCCGATGCGATTTCGGAGCT CCCTTCCCTCAATGCTTCTTTCCCCGACATCCCAAAACAGTATGACAACGACGAGAAAAGATCCACCAACCCCGCCGCCGTCTCCGGAGGCGGCGGCGGG TTTGATTCAGCTGATCTAGAGCTTGAAGAACCCAACCAGAACCAGAACCATCTTCAGCAACAACTCTCCTTATCCAAATCAGCTTGCAGTTGCAACTCGG AGACGAGTAAAGGTTCTGGCTTGTCACTCTCGAGGTCCGACGTGAGGGTTAGTCGCGTTAAGGCCAGGGATAGAGCAAGGGAGAAAGCTGCAGCCAAGGA GAAAGAGAAAGATTCCAACATGCCGCAAGGAATCCCACAGTTCAATCTGTCTGCAGGAGGGGAGAATGCTCATAATCACAATCACAATCACAATCATCAT CATCATCAGGAGCAGCAGCAGCAACTGCAGCTGCAGCATTTCCCATTCGTTTCCGATTATTTGATGCCAGCAGCAGCCACGAGTACACAAGGAGGTCAAC ACAACCAAGGTGTTGACTACAACCTCAACTTCACAATCTCCTCCTCGGGCCTTGCTGGTTTCAATAGGGGGACCCTTCAGTCCAATTCATCTCCATCGCC ATCTCCGTCTCTAGTGTTGCCTCAACAACTCCAACAGAGGTTTCCTAATTCTCACATTGACGGATCATCATCCGCCACACATTTGCCCTTCTTCATTGGT GGTGGTGCTGCAGGTGCACCTCCGCCTCTCGAGAATCACAACCACCTCTTCCCATCTGGGTTGCAGCTCTGCTATGGCGATGGAAGCAGCAGCAGGCACT CTGACCAGAAGGGTAAAGGAGGGAACTGA
AA sequence Show only first row Show all	>Lus10023297 pacid=23181061 polypeptide=Lus10023297 locus=Lus10023297.g ID=Lus10023297.BGIv1.0 annot-version=v1.0 MEVEDLHQTQPPSKFSRISNGGRSDNSKIGTTNGVLGVGGDNNHHHHLRQFQADTEEEDGGGEIKMSLCNTPTGAGPIVAAEVPDGATGNRLRGWHHSRI IRVSRASGGKDRHSKVWTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKAASDAISELPSLNASFPDIPKQYDNDEKRSTNPAAVSGGGGG FDSADLELEEPNQNQNHLQQQLSLSKSACSCNSETSKGSGLSLSRSDVRVSRVKARDRAREKAAAKEKEKDSNMPQGIPQFNLSAGGENAHNHNHNHNHH HHQEQQQQLQLQHFPFVSDYLMPAAATSTQGGQHNQGVDYNLNFTISSSGLAGFNRGTLQSNSSPSPSPSLVLPQQLQQRFPNSHIDGSSSATHLPFFIG GGAAGAPPPLENHNHLFPSGLQLCYGDGSSSRHSDQKGKGGN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18390	TCP	TCP2	TEOSINTE BRANCHED 1, cycloidea...		Lus10023297 [exp]	0	1
AT4G18390	TCP	TCP2	TEOSINTE BRANCHED 1, cycloidea...		Lus10038512 [exp]	1.0	0.9621
AT5G66870	AS2	LBD36, ASL1	LATERAL ORGAN BOUNDARIES DOMAI...		Lus10005313 [exp]	9.3	0.8337
AT1G73360	HD	ATHDG11, HDG11,...	ENHANCED DROUGHT TOLERANCE 1, ...		Lus10031892 [exp]	10.6	0.8513
AT2G16250			Leucine-rich repeat protein ki...		Lus10010823 [exp]	12.6	0.7532
AT2G45150		CDS4	cytidinediphosphate diacylglyc...		Lus10009281 [exp]	13.4	0.7402
AT2G22600			RNA-binding KH domain-containi...		Lus10002662 [exp]	15.5	0.7711
AT1G13230			Leucine-rich repeat (LRR) fami...		Lus10034384 [exp]	17.0	0.7904
AT5G54630	C2H2ZnF		zinc finger protein-related (....		Lus10043080 [exp]	18.1	0.8033
AT3G50390			Transducin/WD40 repeat-like su...		Lus10011699 [exp]	18.3	0.7945
AT5G66870	AS2	LBD36, ASL1	LATERAL ORGAN BOUNDARIES DOMAI...		Lus10009336 [exp]	20.0	0.7985

Compare expression of checked genes

Lus10023297 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.