Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46170 477 / 4e-168 F-box family protein (.1) AT4G18380 438 / 4e-153 F-box family protein (.1.2) AT1G30200 415 / 6e-144 F-box family protein (.1.2) AT1G22220 170 / 2e-49 AUF2 auxin up-regulated f-box protein 2, F-box family protein (.1) AT1G78100 166 / 8e-48 AUF1 auxin up-regulated f-box protein 1, F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038511 [exp] 503 / 3e-180 AT5G46170 453 / 5e-161 F-box family protein (.1) Lus10041123 [exp] 169 / 7e-49 AT1G78100 250 / 2e-81 auxin up-regulated f-box protein 1, F-box family protein (.1) Lus10036451 [exp] 158 / 6e-45 AT1G78100 253 / 2e-82 auxin up-regulated f-box protein 1, F-box family protein (.1) Lus10013431 [exp] 92 / 3e-21 AT4G18380 102 / 4e-25 F-box family protein (.1.2) Lus10040978 [exp] 43 / 8e-05 AT4G18380 44 / 7e-06 F-box family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G082900 [exp] 490 / 4e-173 AT5G46170 488 / 9e-173 F-box family protein (.1) Potri.004G065900 [exp] 487 / 6e-172 AT5G46170 499 / 3e-177 F-box family protein (.1) Potri.005G166500 [exp] 181 / 1e-53 AT1G22220 295 / 1e-99 auxin up-regulated f-box protein 2, F-box family protein (.1) Potri.009G047600 [exp] 181 / 4e-53 AT4G18380 197 / 4e-60 F-box family protein (.1.2) Potri.002G094600 [exp] 152 / 2e-42 AT1G78100 292 / 9e-98 auxin up-regulated f-box protein 1, F-box family protein (.1) Potri.003G203000 [exp] 53 / 1e-07 AT1G22220 52 / 2e-07 auxin up-regulated f-box protein 2, F-box family protein (.1) Potri.003G203500 [exp] 45 / 4e-05 AT4G18380 49 / 2e-06 F-box family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023298 pacid=23181007 polypeptide=Lus10023298 locus=Lus10023298.g ID=Lus10023298.BGIv1.0 annot-version=v1.0 ATGGGTTCGATTCGCGCAGATCCCACTTCCAGAATCTATCCAGACCCTGATTCCTCCTCTTCTTCAACCTTATCCGCCGACGCCGTCGACCACTTCGACC GCCTCCCGGACTCGCTCCTCATCCTCGTCTTCAACAAAATCGGCGACGTCAAGGCTCTAGGACGCTGCTGCGTTGTGAACCATCGATTCCACTCCCTTGT CCCTCAGGTCGAGAGCGTCGTCGTCCGCGTTGACTGCGTCATCTCCGACGACGACACCTCCAACTCCTCCTCCTCTGACAAGTCCCGCTCAGCTTCCTCT TCCACTTCCTCATCGTCCTCCTCCTCATCGGGGTTCTCCTCCATCTTCCGGATGGTCGTCGGCGGAATTGCCAAGCCGTTCCAAGCTTTGGGACAATTCC TTGGTCCAAAACGGGAGATGATCGCTTCCTCAAGGGAAGAAGACGGCGGAGAGATGGATCAAGGAGGCGTTACTCATCATTCACCTACTCAGGTACTCAA GAACTTCAACGAGATTCGATTCCTCAGGATCGAGCTGCCTAGTGGAGAATTAGGGATTGACGATGGCGTGTTGTTGAAATGGAAGGCTGATTTCGGATCT ACCTTGGACAACTGTGTCATCCTTGGGGCCGCATCAGTTATCAACAACAATTCAAAGCAATTCTCTGCGCAGGAATGTCTCGATGTAGCTTGCTCCAACG GTAATAATAATGCAGGAGATGACAACGGGAGCATACCGGAGTCGTTCTACACAAATGGCGGGCTGAAACTGAGAGTGGTCTGGACTATAAGCTCTCTAAT TGCAGCGTCGGCAAGGCATTACTTGCTGCAGCCGATAATTGCAGACCACAAGACGCTGAATAGCTTGGTGTTGACGGATGCAGATGGGCAAGGGGTGCTG TGTATGAACAGGGATCAGCTGGAGGAGCTTAGGGTGAAGCCATTGTCGGCTTCCTCTGCTTCCAAGAGGACTTTAGTTCCTGCTTTGAATATGCGTCTGT GGTATGCTCCTCATTTGGAGCTTCCCAATGGGGTTGTGTTGAAAGGCGCTACTCTTGTTGCTATTAGGCCTAGCGAGCAGACTTCCGCTAAGAAGGAAGT GTGCGATCTTTCCTGGGTTTCCACTGCTTTGTTCTGGTTGTTATTAGGCCTAGCGAGCAGACTTCCGCTAAGAAGGAAGTGTGCGATCTTTCCTGGGTTT CCACTGCTTTCGAGGAACCGTACGGTACTGCTGCTAAGATGCTTGTCAAAAGGAGGACTTACTGCTTGGAGATGA
AA sequence Show only first row Show all	>Lus10023298 pacid=23181007 polypeptide=Lus10023298 locus=Lus10023298.g ID=Lus10023298.BGIv1.0 annot-version=v1.0 MGSIRADPTSRIYPDPDSSSSSTLSADAVDHFDRLPDSLLILVFNKIGDVKALGRCCVVNHRFHSLVPQVESVVVRVDCVISDDDTSNSSSSDKSRSASS STSSSSSSSSGFSSIFRMVVGGIAKPFQALGQFLGPKREMIASSREEDGGEMDQGGVTHHSPTQVLKNFNEIRFLRIELPSGELGIDDGVLLKWKADFGS TLDNCVILGAASVINNNSKQFSAQECLDVACSNGNNNAGDDNGSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPIIADHKTLNSLVLTDADGQGVL CMNRDQLEELRVKPLSASSASKRTLVPALNMRLWYAPHLELPNGVVLKGATLVAIRPSEQTSAKKEVCDLSWVSTALFWLLLGLASRLPLRRKCAIFPGF PLLSRNRTVLLLRCLSKGGLTAWR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46170			F-box family protein (.1)		Lus10023298 [exp]	0	1
AT4G11680			Zinc finger, C3HC4 type (RING ...		Lus10006313 [exp]	1.7	0.8826
AT1G63850			BTB/POZ domain-containing prot...		Lus10040458 [exp]	5.2	0.8543
AT3G61180			RING/U-box superfamily protein...		Lus10029582 [exp]	6.0	0.8608
AT1G22730			MA3 domain-containing protein ...		Lus10011324 [exp]	6.3	0.8501
AT1G24480			S-adenosyl-L-methionine-depend...		Lus10006247 [exp]	7.1	0.8092
AT1G65320			Cystathionine beta-synthase (C...		Lus10037535 [exp]	9.2	0.8447
AT1G03140			splicing factor Prp18 family p...		Lus10042599 [exp]	11.4	0.8266
AT1G16180			Serinc-domain containing serin...		Lus10026111 [exp]	11.5	0.8515
AT3G17000		UBC32	ubiquitin-conjugating enzyme 3...		Lus10016898 [exp]	15.1	0.8477
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Lus10018705 [exp]	16.5	0.8115

Compare expression of checked genes

Lus10023298 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.