Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46180 743 / 0 DELTA-OAT ornithine-delta-aminotransferase (.1) AT1G80600 210 / 1e-62 WIN1 HOPW1-1-interacting 1 (.1) AT2G38400 166 / 5e-46 AGT3 alanine:glyoxylate aminotransferase 3 (.1.2) AT3G08860 164 / 4e-45 PYD4 PYRIMIDINE 4 (.1) AT4G39660 163 / 8e-45 AGT2 alanine:glyoxylate aminotransferase 2 (.1) AT3G22200 150 / 6e-40 HER1, GABA-T, POP2 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) AT5G63570 119 / 6e-29 GSA1 "glutamate-1-semialdehyde-2,1-aminomutase", glutamate-1-semialdehyde-2,1-aminomutase (.1) AT3G48730 118 / 2e-28 GSA2 glutamate-1-semialdehyde 2,1-aminomutase 2 (.1) AT5G57590 55 / 1e-07 BIO1 biotin auxotroph 1, adenosylmethionine-8-amino-7-oxononanoate transaminases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038510 [exp] 964 / 0 AT5G46180 741 / 0.0 ornithine-delta-aminotransferase (.1) Lus10031196 [exp] 203 / 6e-60 AT1G80600 606 / 0.0 HOPW1-1-interacting 1 (.1) Lus10008025 [exp] 202 / 1e-58 AT1G80600 614 / 0.0 HOPW1-1-interacting 1 (.1) Lus10004480 [exp] 167 / 3e-46 AT4G39660 801 / 0.0 alanine:glyoxylate aminotransferase 2 (.1) Lus10029922 [exp] 167 / 3e-46 AT4G39660 801 / 0.0 alanine:glyoxylate aminotransferase 2 (.1) Lus10025262 [exp] 160 / 2e-43 AT3G08860 722 / 0.0 PYRIMIDINE 4 (.1) Lus10003810 [exp] 152 / 1e-40 AT3G22200 758 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Lus10010465 [exp] 152 / 2e-40 AT3G22200 756 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Lus10030551 [exp] 127 / 1e-31 AT3G48730 764 / 0.0 glutamate-1-semialdehyde 2,1-aminomutase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G082800 [exp] 772 / 0 AT5G46180 734 / 0.0 ornithine-delta-aminotransferase (.1) Potri.005G095800 [exp] 211 / 8e-63 AT1G80600 636 / 0.0 HOPW1-1-interacting 1 (.1) Potri.017G053500 [exp] 204 / 2e-60 AT1G80600 677 / 0.0 HOPW1-1-interacting 1 (.1) Potri.007G085600 [exp] 166 / 6e-46 AT4G39660 814 / 0.0 alanine:glyoxylate aminotransferase 2 (.1) Potri.016G018500 [exp] 160 / 1e-43 AT3G22200 826 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Potri.006G020900 [exp] 153 / 7e-41 AT3G22200 834 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Potri.006G106800 [exp] 149 / 1e-39 AT3G08860 771 / 0.0 PYRIMIDINE 4 (.1) Potri.016G132200 [exp] 145 / 3e-38 AT2G38400 769 / 0.0 alanine:glyoxylate aminotransferase 3 (.1.2) Potri.015G101100 [exp] 122 / 4e-30 AT3G48730 749 / 0.0 glutamate-1-semialdehyde 2,1-aminomutase 2 (.1) Potri.005G082100 [exp] 80 / 5e-17 AT4G39660 219 / 1e-69 alanine:glyoxylate aminotransferase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00202 [flax] [poplar] Aminotran_3 Aminotransferase class-III
Representative CDS sequence Show only first row Show all	>Lus10023299 pacid=23181065 polypeptide=Lus10023299 locus=Lus10023299.g ID=Lus10023299.BGIv1.0 annot-version=v1.0 ATGGCAGCCGCCGCAATCAGGAAACCTGCTCAAACCTTCCTCACCCGAGCTCTCAGACACGCTCGAACCTCCTCCACCATGGGAAGCGCCGTTGCTGAAG GACGACGACCGGCGCCCCTTTCTTCCTCCGACCAACTCATCAACTTAGAGGCCGAGTGCAGCGCCCACAATTACCACCCAGTTCCAATCGTCTTCTCTCA AGCAAAAGGATCGTCTATTTGGGATCCTGAAGGCAAAAAGTATCTAGATTTCCTTGCTGCTTACTCTGCAGTTAATCAGGGACATTGTCATCCGAAGATC ATGAAGGCATTGAAGGACCAGGCAGAGAATCTGACCTTGAGCTCCAGAGCCTTCTATAACGACAAGTTCCCGATATATGCAGAGCGTATAACCACCATGT TTGGTTATGATATGGTGCTGCCGATGAACACTGGCGCTGAGGGAGTTGAAACTGCGTTGAAATTGGCAAGGAAATGGGGATATGAGAAGAAAAAGATTCC GAAAGATGAGGCCTTTATCGTCTCTTGTTGTGGCTGCTTCCATGGCCGTACATTGGCTGTCATCTCCATGAGTTGTGACAATGAGGCTACTCGAGGTTTC GGGCCTTTGTTACCTGGACATCTGAAGGTTGATTTCGGTGACATCGTTGCTCTCGAAAACTTGTTTAAAGAGAAGGGAGATCGGATAGCCGGATTTCTTT TCGAACCTATTCAAGGAGAGGCCGGGGTTGTGATTCCTCCAGATGGATACTTAAAATCTGTGAGAGACCTTTGCTCAAAATACAATGTCCTAATGATTGC TGATGAAGTTCAATCTGGCTTAGCACGAAGCGGAAAGATGCTTGCTTGTGATTGGGAAGAAGTCCGGCCAGATGTAGTGATACTGGGCAAGGCATTGGGT GGTGGAGTGATACCGGTTAGCGCGGTGTTGGCAGATAAAGATGTAATGCTTTGCATTCAACCTGGTGAACATGGAAGCACATTCGGGGGGAATCCTTTGG CGAGTGCTGTTGCGATCACCTCGTTAGACGTGCTTCAAGAAGAAGAACTCGCCGAAAGATCAGCACAGTTAGGGGAGGAGCTCAGGAGCCAGCTACGTAA GATGCAAGAGCAGTTTCCGGATTACATCAAGGAAGTTCGAGGAAGAGGTTTGTTCAATGCCGTGGAATTCGACAGCAAGGCTTTATCCCCAGTGTCTGCT TACGATCTCTGCCTGAAACTGAAGGAAAGAGGAGTTCTTGCTAAGCCAACTCATGACACCATTGTCCGATTAACCCCTCCTCTCTGTATAAGTTCGGATG AGGTGAAGGAAGCTTCAAAGGCACTTCATGCAGTCCTGGATGTTGACCTGCCAGATTTGCAGAAGGATAAGGCAGAAAAGAGTTCTTCTCATAATCAAAC TCATGCTGCGCCGAATACCTGTGACCGATGTGGTCGAAGATCGTAA
AA sequence Show only first row Show all	>Lus10023299 pacid=23181065 polypeptide=Lus10023299 locus=Lus10023299.g ID=Lus10023299.BGIv1.0 annot-version=v1.0 MAAAAIRKPAQTFLTRALRHARTSSTMGSAVAEGRRPAPLSSSDQLINLEAECSAHNYHPVPIVFSQAKGSSIWDPEGKKYLDFLAAYSAVNQGHCHPKI MKALKDQAENLTLSSRAFYNDKFPIYAERITTMFGYDMVLPMNTGAEGVETALKLARKWGYEKKKIPKDEAFIVSCCGCFHGRTLAVISMSCDNEATRGF GPLLPGHLKVDFGDIVALENLFKEKGDRIAGFLFEPIQGEAGVVIPPDGYLKSVRDLCSKYNVLMIADEVQSGLARSGKMLACDWEEVRPDVVILGKALG GGVIPVSAVLADKDVMLCIQPGEHGSTFGGNPLASAVAITSLDVLQEEELAERSAQLGEELRSQLRKMQEQFPDYIKEVRGRGLFNAVEFDSKALSPVSA YDLCLKLKERGVLAKPTHDTIVRLTPPLCISSDEVKEASKALHAVLDVDLPDLQKDKAEKSSSHNQTHAAPNTCDRCGRRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46180		DELTA-OAT	ornithine-delta-aminotransfera...		Lus10023299 [exp]	0	1
AT3G11690			unknown protein		Lus10016197 [exp]	2.6	0.9318
AT1G68300			Adenine nucleotide alpha hydro...		Lus10034337 [exp]	6.0	0.9274
AT2G24550			unknown protein		Lus10020142 [exp]	6.9	0.9330
AT4G34030		MCCB	3-methylcrotonyl-CoA carboxyla...		Lus10019848 [exp]	7.7	0.9381
AT5G67380		ATCKA1, CKA1	casein kinase alpha 1 (.1.2)		Lus10019288 [exp]	9.8	0.9164
AT1G15740			Leucine-rich repeat family pro...		Lus10008036 [exp]	9.9	0.9368
AT2G43330		ATINT1	inositol transporter 1 (.1)		Lus10027026 [exp]	10.2	0.9219
AT1G44790			ChaC-like family protein (.1)		Lus10003737 [exp]	13.2	0.9156
AT3G06850		DIN3, LTA1, BCE...	DARK INDUCIBLE 3, 2-oxoacid de...		Lus10037492 [exp]	13.2	0.9338
AT3G48240			Octicosapeptide/Phox/Bem1p fam...		Lus10000441 [exp]	15.3	0.9353

Compare expression of checked genes

Lus10023299 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.