Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46190 612 / 0 RNA-binding KH domain-containing protein (.1) AT4G18375 555 / 0 RNA-binding KH domain-containing protein (.1.2) AT5G15270 220 / 1e-63 RNA-binding KH domain-containing protein (.1.2) AT5G53060 184 / 8e-50 RNA-binding KH domain-containing protein (.1.2) AT1G51580 162 / 2e-42 RNA-binding KH domain-containing protein (.1) AT1G14170 110 / 1e-25 RNA-binding KH domain-containing protein (.1.2.3) AT5G64390 102 / 2e-22 HEN4 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) AT4G26000 92 / 1e-19 PEP PEPPER, RNA-binding KH domain-containing protein (.1) AT3G04610 89 / 4e-18 FLK flowering locus KH domain, RNA-binding KH domain-containing protein (.1) AT2G22600 82 / 7e-16 RNA-binding KH domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038509 [exp] 1182 / 0 AT5G46190 653 / 0.0 RNA-binding KH domain-containing protein (.1) Lus10030689 [exp] 230 / 2e-67 AT5G15270 638 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10005232 [exp] 225 / 5e-65 AT5G15270 634 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10037163 [exp] 189 / 1e-51 AT5G15270 491 / 1e-167 RNA-binding KH domain-containing protein (.1.2) Lus10036767 [exp] 183 / 9e-50 AT5G15270 483 / 2e-165 RNA-binding KH domain-containing protein (.1.2) Lus10028237 [exp] 168 / 6e-44 AT5G64390 243 / 8e-71 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Lus10022390 [exp] 164 / 6e-43 AT5G53060 692 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10033557 [exp] 146 / 3e-38 AT5G15270 201 / 3e-59 RNA-binding KH domain-containing protein (.1.2) Lus10005915 [exp] 146 / 8e-37 AT5G53060 599 / 0.0 RNA-binding KH domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G066100 [exp] 796 / 0 AT4G18375 558 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.011G082500 [exp] 751 / 0 AT5G46190 525 / 5e-180 RNA-binding KH domain-containing protein (.1) Potri.004G123400 [exp] 237 / 6e-70 AT5G15270 596 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.017G085500 [exp] 231 / 1e-67 AT5G15270 592 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.017G114400 [exp] 208 / 5e-58 AT5G15270 259 / 8e-78 RNA-binding KH domain-containing protein (.1.2) Potri.002G112200 [exp] 197 / 4e-54 AT5G53060 243 / 7e-71 RNA-binding KH domain-containing protein (.1.2) Potri.008G088600 [exp] 186 / 4e-51 AT5G15270 454 / 5e-155 RNA-binding KH domain-containing protein (.1.2) Potri.012G017200 [exp] 187 / 1e-50 AT5G53060 656 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.010G167100 [exp] 178 / 2e-48 AT5G15270 455 / 3e-155 RNA-binding KH domain-containing protein (.1.2) Potri.015G011100 [exp] 180 / 3e-48 AT5G53060 699 / 0.0 RNA-binding KH domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0007 [flax] [poplar] KH PF00013 [flax] [poplar] KH_1 KH domain
Representative CDS sequence Show only first row Show all	>Lus10023300 pacid=23180984 polypeptide=Lus10023300 locus=Lus10023300.g ID=Lus10023300.BGIv1.0 annot-version=v1.0 ATGGATTTCTTTTGTGCAATCCTTGGCGAAATGAAGCTCAATTGTTTAGTCTTGTGTATTGCTTCCAGGTTCGAACTGGTAACACTTGGAATGGGCGAAG GTGGTAAGCGACCACGTCGACAAAGAGAGTACGACGAGGATAAAAAGATACATAATAAGAGGCGAATAAACGATACGGATGAAAGGGGCAACGATGAACT GGTTGTGTACAGAATACTGTGCCCAGATGAGGTTATTGGAAGCGTCATTGGTAAAAACGGGAAAGTAATAAACTCAATCAGGCAAGAAACTAGAGCCAAA GTCAAGGTGGTGGATCCGTTTCCAGGAGCCAAGGAGAGAGTCATAACCATCTATTGTTATGTCAAAGAAAAGGCTGATTTTGATGTTGAAAACGGATGCA GTACTGTTACACCTTTATGTGCTGCACAGGATGCCCTTCTTAAAGTTCATGCTGCTATCAGTAATGCAATTGCAACTAATGTAGATCCGGAGATGGATAG GAAAGACAAGGAGGAATGCCGAATGCTTGTTCCGTCCAGCCAGTCTTCGACTGTTATCGGTAAGGCTGGGATTACTATAAAGAAGCTGAGAGGTAAAACA AGGTCCAGCATTAAAGTCATCCCCAAGGATGTGTCTGACCCTAGTCATGCATGTGCTATGGATTTTGATAACTTTATCATGATATCTGGTGAGTCGGAGT CTGTGAAGAGAGCTTTATTTGCTGTTTCTGCAATAATGTACAAGTTTGGTCCTAAAGAAGTAGTTCCTCTAGAGACAACAGTGCCAGATGCTGCTCCAAG CATCATTATACCGTCAGATGTCCCTATCTATTCAACAGCTGGACTATATCCAAATGCAGATCATCTTCTCCCTACTAGATCCCTTTCATCAAACATAGGT CCCACACATGTACAAGAACATCTAGGTTACGGTGATGCAAGTGGTTCATGGCCTATTTATTCATCAACCCTACCCATGATTCCTAGTTTGGGAAGTGCTG CTCGACTCGAAGAGTTAATTGTCCGGGTGTTGTGCCCTTTCAGCAAAATTGGACGTGTCATTGGCAAGGGAGGGGGTACTATTAAAAGCATAAGGCATAC TACTGGTGCTCGTATTGAGGTTGATGATTCAAAGGTTGACCGTGATGAGTGTCTCGTAACTGTCATTGCAGCGGAGTCACCTGACGACTTGAAATCCATG GCTGTTGAAGCGGTTCTATTGCTCCAAGAAAAAATCAGCGAGGATGATGAGGATACTGTTACTATGAGGCTACTTATCACTTCTAAAGTAATAGGGTGTA TCATTGGGAGAAGTGGTTTAATTATCAGTGAAATTAGAAAGAGAACTAATGCAGATATCCGTATCTCAAAAGCTGATAAGCCAAAATGTGCAAAGGCTAA TGATGAACTTGTTGAGTTGCAAGGGGAAGTAGGTTGTGTTAGGGATGCACTTGTCCAGATTATTCTGAGGCTTAGAGAAGATGCATTAAGAGACAGAGAC AGTGGTCATAGTTCTGCCCCAGCTGAATCATTATACTCAGGAGCCCCTGGGCTTCCGGTCACTTCTTTCTTGCATGCAATGCCTCCTATTAATCCATTGG GATATGATCAGAGAGTTGAAGCTGGGCTTCTTTCCTCCAGCAGCCTTCACGGCTATGGACCTTTGTCTATTCGGGAGAATGACTATGGATCAATGTGCTC CTATTCGTCATCCAAGATATATGGAGGGTTGCCTCAACCCTCAACTATTGAGATGTTGGTGCCTGCCAATACTGTAGGGAAAGTCTTGGGCAAAGGCGGG ACGAACATTGCCAATATTCGAAAGATATCAGGAGCAATGATTGAAATTTCTGAATCCAGGAGTGGAAGGGGTGATCGCATTGCATATATATCTGGTACAA CGGAGCAAAGAAATTCAGCTGAAAACTTGATCCAGGCATTCATGATGGCTACCTAG
AA sequence Show only first row Show all	>Lus10023300 pacid=23180984 polypeptide=Lus10023300 locus=Lus10023300.g ID=Lus10023300.BGIv1.0 annot-version=v1.0 MDFFCAILGEMKLNCLVLCIASRFELVTLGMGEGGKRPRRQREYDEDKKIHNKRRINDTDERGNDELVVYRILCPDEVIGSVIGKNGKVINSIRQETRAK VKVVDPFPGAKERVITIYCYVKEKADFDVENGCSTVTPLCAAQDALLKVHAAISNAIATNVDPEMDRKDKEECRMLVPSSQSSTVIGKAGITIKKLRGKT RSSIKVIPKDVSDPSHACAMDFDNFIMISGESESVKRALFAVSAIMYKFGPKEVVPLETTVPDAAPSIIIPSDVPIYSTAGLYPNADHLLPTRSLSSNIG PTHVQEHLGYGDASGSWPIYSSTLPMIPSLGSAARLEELIVRVLCPFSKIGRVIGKGGGTIKSIRHTTGARIEVDDSKVDRDECLVTVIAAESPDDLKSM AVEAVLLLQEKISEDDEDTVTMRLLITSKVIGCIIGRSGLIISEIRKRTNADIRISKADKPKCAKANDELVELQGEVGCVRDALVQIILRLREDALRDRD SGHSSAPAESLYSGAPGLPVTSFLHAMPPINPLGYDQRVEAGLLSSSSLHGYGPLSIRENDYGSMCSYSSSKIYGGLPQPSTIEMLVPANTVGKVLGKGG TNIANIRKISGAMIEISESRSGRGDRIAYISGTTEQRNSAENLIQAFMMAT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46190			RNA-binding KH domain-containi...		Lus10023300 [exp]	0	1
AT5G17930			MIF4G domain-containing protei...		Lus10014048 [exp]	2.4	0.9004
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Lus10036017 [exp]	2.6	0.8808
AT4G20850		TPP2	tripeptidyl peptidase ii (.1)		Lus10027482 [exp]	3.2	0.9028
AT5G54280		ATMYOS1, ATM4, ...	ARABIDOPSIS THALIANA MYOSIN 1,...		Lus10037876 [exp]	4.2	0.8934
AT3G06660			PAPA-1-like family protein / z...		Lus10016899 [exp]	4.2	0.8764
AT2G40430			unknown protein		Lus10037530 [exp]	4.5	0.8754
AT5G23740		RPS11-BETA	ribosomal protein S11-beta (.1...		Lus10008806 [exp]	6.5	0.8506
AT1G07110		FKFBP, ATF2KP, ...	"fructose-2,6-bisphosphatase",...		Lus10026380 [exp]	7.9	0.8421
AT4G18465			RNA helicase family protein (....		Lus10025127 [exp]	8.7	0.8918
AT2G44950		RDO4, HUB1	REDUCED DORMANCY 4, histone mo...		Lus10028187 [exp]	10.0	0.8911

Compare expression of checked genes

Lus10023300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.