Plant FIBer expression Database

Lus10023301 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G30190 46 / 1e-05 unknown protein
AT2G34610 42 / 0.0001 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038508
[exp]
270 / 1e-91 AT1G30190 62 / 2e-11 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G083600
[exp]
62 / 2e-11 AT2G34610 52 / 7e-08 unknown protein
Potri.004G065300
[exp]
54 / 1e-08 AT1G30190 76 / 5e-16 unknown protein
PFAM info
Representative CDS sequence
>Lus10023301 pacid=23180950 polypeptide=Lus10023301 locus=Lus10023301.g ID=Lus10023301.BGIv1.0 annot-version=v1.0
ATGGATCACCTCCAACCTCCAAATATAGCACTGAACAAACCAATCGAAATCAACGGCTGGGATCCAAAGCACCAATACCAGAACAACAAGCCACTAAGAT
CATCATCACCATCATCAATAATCTCCTTCATGGCTTCTCTAATAACCTCCCTTCTCATCATCTATATCTCCTTAGCTTATATCCACAACCCCAACTTCTT
CTGGTGGCTAATCTCCAACAATTTGGTTCTCATCATCGCCTCCGATTACGCTGCGGCCCATGATCAAAGTCATTACGATGATGATGATCATCATCCCTAC
GGAATGAAGAGACGCACACGATTCCCTCCCCCTGCCCTCCTAACTCGCCGGAACAGCGCCCCTGGAGGAGGCATTGCACGACAGTCAAACGTCGACGAGC
GGGGTCAACGCTCCACGAGCATACTCAAACCAAAAGGGGCCGGGGTGGATGGGATCGAATCGGCTCAGCTTTGTCGGAGTCAATCGCAGAGACGTGGTAA
TAAGAAGGTGGTGATCGACGAGAGCAGAAACATCGTTAGGAGATTCGAGAGGGTTGTGCCTCCTCCACCCGACGATGATGACCGCTTGTCTGACCACGGC
GGCGGCGACGATGAGGAAGATAGCAATAATGAGTACGCCAAATTGTCGACCGAGGAGCTTAACAAACGGATGGAGGACTTCATTCAAAGATTCAACACGC
AGATTCGTCTTCAGAACCAGATAGAGGGCTAA
AA sequence
>Lus10023301 pacid=23180950 polypeptide=Lus10023301 locus=Lus10023301.g ID=Lus10023301.BGIv1.0 annot-version=v1.0
MDHLQPPNIALNKPIEINGWDPKHQYQNNKPLRSSSPSSIISFMASLITSLLIIYISLAYIHNPNFFWWLISNNLVLIIASDYAAAHDQSHYDDDDHHPY
GMKRRTRFPPPALLTRRNSAPGGGIARQSNVDERGQRSTSILKPKGAGVDGIESAQLCRSQSQRRGNKKVVIDESRNIVRRFERVVPPPPDDDDRLSDHG
GGDDEEDSNNEYAKLSTEELNKRMEDFIQRFNTQIRLQNQIEG

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G30190 unknown protein Lus10023301
[exp]
0 1
AT4G33270 AtCDC20.1, CDC2... cell division cycle 20.1, Tran... Lus10025838
[exp]
2.2 0.9455
AT1G13520 Protein of unknown function (D... Lus10035080
[exp]
3.7 0.9523
AT5G67640 unknown protein Lus10011552
[exp]
4.5 0.9357
AT1G17010 2-oxoglutarate (2OG) and Fe(II... Lus10025369
[exp]
6.1 0.9044
AT5G59790 Domain of unknown function (DU... Lus10003286
[exp]
6.7 0.9321
AT5G41210 GSTU12, GST10, ... glutathione S-transferase THET... Lus10008021
[exp]
7.5 0.9456
Lus10003784
[exp]
9.0 0.8932
AT4G17900 PLATZ transcription factor fam... Lus10004577
[exp]
9.4 0.9470
AT4G38540 FAD/NAD(P)-binding oxidoreduct... Lus10034467
[exp]
10.1 0.9457
AT3G06240 F-box family protein (.1) Lus10018106
[exp]
10.3 0.8878

Lus10023301 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.