Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14420 652 / 0 Aldolase-type TIM barrel family protein (.1.2.3.4.5.6) AT4G18360 647 / 0 Aldolase-type TIM barrel family protein (.1.2) AT3G14415 638 / 0 Aldolase-type TIM barrel family protein (.1.2.3) AT3G14130 456 / 5e-161 Aldolase-type TIM barrel family protein (.1) AT3G14150 447 / 2e-157 Aldolase-type TIM barrel family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038507 [exp] 705 / 0 AT4G18360 665 / 0.0 Aldolase-type TIM barrel family protein (.1.2) Lus10005590 [exp] 637 / 0 AT3G14420 675 / 0.0 Aldolase-type TIM barrel family protein (.1.2.3.4.5.6) Lus10013725 [exp] 635 / 0 AT3G14420 675 / 0.0 Aldolase-type TIM barrel family protein (.1.2.3.4.5.6) Lus10042495 [exp] 491 / 2e-176 AT4G18360 461 / 1e-164 Aldolase-type TIM barrel family protein (.1.2) Lus10038144 [exp] 459 / 2e-163 AT4G18360 435 / 4e-154 Aldolase-type TIM barrel family protein (.1.2) Lus10013171 [exp] 436 / 3e-153 AT3G14130 521 / 0.0 Aldolase-type TIM barrel family protein (.1) Lus10008133 [exp] 431 / 3e-151 AT3G14130 518 / 0.0 Aldolase-type TIM barrel family protein (.1) Lus10013173 [exp] 219 / 6e-71 AT3G14130 246 / 7e-82 Aldolase-type TIM barrel family protein (.1) Lus10013724 [exp] 161 / 3e-49 AT3G14420 170 / 2e-53 Aldolase-type TIM barrel family protein (.1.2.3.4.5.6)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G065200 [exp] 656 / 0 AT3G14420 651 / 0.0 Aldolase-type TIM barrel family protein (.1.2.3.4.5.6) Potri.011G112700 [exp] 646 / 0 AT3G14420 669 / 0.0 Aldolase-type TIM barrel family protein (.1.2.3.4.5.6) Potri.001G394400 [exp] 644 / 0 AT3G14420 668 / 0.0 Aldolase-type TIM barrel family protein (.1.2.3.4.5.6) Potri.003G069600 [exp] 447 / 7e-158 AT3G14130 502 / 2e-179 Aldolase-type TIM barrel family protein (.1) Potri.003G069400 [exp] 446 / 4e-157 AT3G14130 529 / 0.0 Aldolase-type TIM barrel family protein (.1) Potri.003G069300 [exp] 432 / 1e-151 AT3G14130 518 / 0.0 Aldolase-type TIM barrel family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF01070 [flax] [poplar] FMN_dh FMN-dependent dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10023302 pacid=23180974 polypeptide=Lus10023302 locus=Lus10023302.g ID=Lus10023302.BGIv1.0 annot-version=v1.0 ATGGAGATTACCAACGTGATGGAGTATGAAGAAATCGCGAGGCAGAAATTGCCTAAGATGGTGTATGACTACTACGCCTCCGGTGCGGAGGATCAGTGGA GTCTGAAAGAAAATCGAAATGCCTTTTCTCGCATCCTGTTTCGGCCGAGGATTCTTGTGGATGTGAGCAAGATTGACATGACCACTGCTGTTTTGGGATT CAACGTTTCCATGCCTATCATGATTGCTCCTACCGCTATGCAGAAAATGGCTCATCCTGATGGGGAGAATGCAACAGCAAGAGCAGCTTCAGCAGCAGGC ACCATTATGACATTGTCGTCATGGGCCACATCCAGTGTTGAAGAGGTTGCTTCAACTGGTCCTGGCATTCGCTTCTTCCAACTCTATGTGTACAAAGACA GGAATGTGGTTCAACAGATGGTAAAAAGAGCCGAGCGAGCCGGTTTCAAGGCGATTGCACTTACGGTTGACACTCCGAGACTTGGCCGGAGAGAAGCCGA TATTAAGAACAGGTTTGCTTTGCCTAGCAATTTGACTCTAAAAAACTTTGAAGGCCTGGACTTGGGAAAAATAGACAAGACCAGTGACTCGGGATTGGCC TCCTACGTTGCTGGCCAAGTTGACCGGACGCTTAGCTGGAAGGATGTCAAGTGGCTTCAAACCATCACTTCATTGCCAATTCTAGTCAAAGGGGTGCTCA CTGCTGAAGACGCGAGACTATCGGTAGAAAATGGAGCTTCAGGAATCATTGTGTCCAATCATGGAGCACGCCAGCTCGATTACGTACCCGCCACCATCAC AGCTCTGGAAGAGGTAGTGAAAGCTGCACAAGGCAGAGTTCCCGTGTTCTTGGATGGAGGAGTTCGTCGAGGGACCGACGTGTTCAAGGCGCTGGCGTTG GGAGCAACTGGTGTATTTATTGGAAGGCCGGTGGTGTTCGCATTGGCAGCGGACGGGGAAGGGGGGGTGAGGAAGGTGCTACAGATGCTGAGGGATGAGC TTGAATTGACAATGGCGTTAAGCGGATGCACTTCGCTCAAGGAGATTTCTCGCAACCATGTCGTCACCGACTGGGACCCTCCTCGCACCCTTCCTAGCAG CAGGTTATGA
AA sequence Show only first row Show all	>Lus10023302 pacid=23180974 polypeptide=Lus10023302 locus=Lus10023302.g ID=Lus10023302.BGIv1.0 annot-version=v1.0 MEITNVMEYEEIARQKLPKMVYDYYASGAEDQWSLKENRNAFSRILFRPRILVDVSKIDMTTAVLGFNVSMPIMIAPTAMQKMAHPDGENATARAASAAG TIMTLSSWATSSVEEVASTGPGIRFFQLYVYKDRNVVQQMVKRAERAGFKAIALTVDTPRLGRREADIKNRFALPSNLTLKNFEGLDLGKIDKTSDSGLA SYVAGQVDRTLSWKDVKWLQTITSLPILVKGVLTAEDARLSVENGASGIIVSNHGARQLDYVPATITALEEVVKAAQGRVPVFLDGGVRRGTDVFKALAL GATGVFIGRPVVFALAADGEGGVRKVLQMLRDELELTMALSGCTSLKEISRNHVVTDWDPPRTLPSSRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18360			Aldolase-type TIM barrel famil...		Lus10023302 [exp]	0	1
AT5G16120			alpha/beta-Hydrolases superfam...		Lus10009169 [exp]	1.0	0.9852
AT1G80730	C2H2ZnF	ATZFP1, ZFP1	ARABIDOPSIS THALIANA ZINC-FING...		Lus10014350 [exp]	1.4	0.9766
AT2G47000		PGP4 ,MDR4, ABC...	MULTIDRUG RESISTANCE 4, ARABID...		Lus10038050 [exp]	2.2	0.9675
AT4G25770			alpha/beta-Hydrolases superfam...		Lus10006982 [exp]	2.6	0.9664
AT5G03700			D-mannose binding lectin prote...		Lus10014371 [exp]	2.8	0.9662
AT1G62300	WRKY	ATWRKY6, WRKY6	WRKY family transcription fact...		Lus10030040 [exp]	3.6	0.9617
AT1G49670		NQR	ARP protein (REF) (.1), ARP pr...		Lus10027904 [exp]	3.9	0.9723
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10015519 [exp]	4.7	0.9527
AT5G14420		RGLG2	RING domain ligase2 (.1.2.3.4)		Lus10000144 [exp]	5.7	0.9611
AT3G62150		ABCB21, PGP21	ATP-binding cassette B21, P-gl...		Lus10000052 [exp]	5.7	0.9680

Compare expression of checked genes

Lus10023302 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.