Plant FIBer expression Database

Lus10023303 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G30135 56 / 8e-11 ZIM TIFY5A, JAZ8 jasmonate-zim-domain protein 8 (.1)
AT2G34600 43 / 1e-05 ZIM TIFY5B, JAZ7 jasmonate-zim-domain protein 7 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038506
[exp]
188 / 2e-62 AT1G30135 57 / 4e-11 jasmonate-zim-domain protein 8 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G023301
[exp]
56 / 2e-10 AT1G30135 73 / 2e-17 jasmonate-zim-domain protein 8 (.1)
Potri.011G083900
[exp]
42 / 3e-05 AT1G30135 69 / 1e-15 jasmonate-zim-domain protein 8 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0281 CCT PF09425 Jas_motif Jas motif
CL0281 PF06200 tify tify domain
Representative CDS sequence
>Lus10023303 pacid=23180994 polypeptide=Lus10023303 locus=Lus10023303.g ID=Lus10023303.BGIv1.0 annot-version=v1.0
ATGGAAGACAACCGCCGCCCCAGCTGCAACCTCGAGCTCAGCCTCGTTTCCCCGGCGAGCTCCATCTCCGCCGACGACCAGCAGCAGCAGCCGATGACGA
TTTTCTACGAGGGGAGGTGCTGTTGCATCCGCGACGTGACGGAGTTCCAAGCCAGAGCAATTATAATGCTGGCGAGCGTTCAAGAACAGAGGACGACTAG
CACGGATAAGAAATCAGAAGCAGCGGATGATGATAAATCGGTGACGAGTGATCCGCCGTCGTCTGCGATCGTGGAGAGCTATCCGCCGGCGGTGAGGCAG
TCGATGAAGAGGTCGCTGCAGAGGTTTTTCCTTCAGAAACGGAAAGGTCGCGGTGGCCAGGCGGCGGCTGATCGGTCGTCGCCGTACTCGCGGCCTCCTA
CATCTAGACGCGATTTGCAGAAGGAGCTAGCAGCTAGCTTAGCTACTCGTTGA
AA sequence
>Lus10023303 pacid=23180994 polypeptide=Lus10023303 locus=Lus10023303.g ID=Lus10023303.BGIv1.0 annot-version=v1.0
MEDNRRPSCNLELSLVSPASSISADDQQQQPMTIFYEGRCCCIRDVTEFQARAIIMLASVQEQRTTSTDKKSEAADDDKSVTSDPPSSAIVESYPPAVRQ
SMKRSLQRFFLQKRKGRGGQAAADRSSPYSRPPTSRRDLQKELAASLATR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G30135 ZIM TIFY5A, JAZ8 jasmonate-zim-domain protein 8... Lus10023303
[exp]
0 1
AT1G30135 ZIM TIFY5A, JAZ8 jasmonate-zim-domain protein 8... Lus10038506
[exp]
1.0 0.9610
AT4G34410 AP2_ERF RRTF1 (Redox Re... redox responsive transcription... Lus10014054
[exp]
3.2 0.9447
AT1G12610 AP2_ERF DDF1, DREB1F, F... DWARF AND DELAYED FLOWERING 1,... Lus10029602
[exp]
3.9 0.9416
Lus10022773
[exp]
4.5 0.9272
Lus10025243
[exp]
5.7 0.9290
AT2G35930 PUB23 plant U-box 23 (.1) Lus10013584
[exp]
5.9 0.9253
AT5G56970 ATCKX3, CKX3 cytokinin oxidase 3 (.1) Lus10031778
[exp]
7.2 0.9113
AT5G48655 RING/U-box superfamily protein... Lus10022774
[exp]
9.0 0.9199
AT4G16600 Nucleotide-diphospho-sugar tra... Lus10004717
[exp]
9.2 0.9115
AT5G47390 MYB myb-like transcription factor ... Lus10004384
[exp]
11.5 0.9269

Lus10023303 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.