Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34590 650 / 0 Transketolase family protein (.1) AT1G30120 639 / 0 PDH-E1 BETA, PDH-E1BETA pyruvate dehydrogenase E1 beta (.1) AT5G50850 253 / 8e-81 MAB1 MACCI-BOU, Transketolase family protein (.1) AT1G55510 194 / 2e-58 BCDH BETA1, BCDHBETA1 branched-chain alpha-keto acid decarboxylase E1 beta subunit (.1) AT3G13450 188 / 4e-56 DIN4 DARK INDUCIBLE 4, Transketolase family protein (.1) AT3G21500 47 / 3e-05 DXPS1 1-deoxy-D-xylulose 5-phosphate synthase 1 (.1.2) AT4G15560 46 / 4e-05 AtCLA1, DXS, DXPS2, DEF, CLA1 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038505 [exp] 774 / 0 AT2G34590 693 / 0.0 Transketolase family protein (.1) Lus10032550 [exp] 251 / 1e-80 AT5G50850 613 / 0.0 MACCI-BOU, Transketolase family protein (.1) Lus10032549 [exp] 252 / 5e-79 AT5G50850 628 / 0.0 MACCI-BOU, Transketolase family protein (.1) Lus10043191 [exp] 257 / 5e-77 AT5G50850 635 / 0.0 MACCI-BOU, Transketolase family protein (.1) Lus10010324 [exp] 193 / 1e-57 AT1G55510 619 / 0.0 branched-chain alpha-keto acid decarboxylase E1 beta subunit (.1) Lus10013401 [exp] 194 / 2e-57 AT1G55510 622 / 0.0 branched-chain alpha-keto acid decarboxylase E1 beta subunit (.1) Lus10039361 [exp] 57 / 4e-10 AT5G50850 135 / 9e-40 MACCI-BOU, Transketolase family protein (.1) Lus10015519 [exp] 44 / 0.0002 AT4G15560 578 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10015517 [exp] 43 / 0.0004 AT4G15560 1020 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G076500 [exp] 665 / 0 AT2G34590 671 / 0.0 Transketolase family protein (.1) Potri.004G129800 [exp] 656 / 0 AT2G34590 634 / 0.0 Transketolase family protein (.1) Potri.003G166400 [exp] 259 / 2e-83 AT5G50850 636 / 0.0 MACCI-BOU, Transketolase family protein (.1) Potri.001G061400 [exp] 257 / 2e-82 AT5G50850 640 / 0.0 MACCI-BOU, Transketolase family protein (.1) Potri.003G222800 [exp] 190 / 1e-56 AT1G55510 632 / 0.0 branched-chain alpha-keto acid decarboxylase E1 beta subunit (.1) Potri.006G171700 [exp] 43 / 0.0003 AT4G15560 1037 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0254 [flax] [poplar] THDP-binding PF02779 [flax] [poplar] Transket_pyr Transketolase, pyrimidine binding domain CL0591 [flax] [poplar] TKC_like PF02780 [flax] [poplar] Transketolase_C Transketolase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10023304 pacid=23181075 polypeptide=Lus10023304 locus=Lus10023304.g ID=Lus10023304.BGIv1.0 annot-version=v1.0 ATGGCGACGATTTTCCAGGGATTGGGAGCCGCTGCTGCAGTCACTTCCTCCACTCGCTTCCATTCCAACAAGTCCCTTCGCGGATCTTTCCCAGAGAGGA GAAAGAGCTTGTTCGTGGTCAGATCTGAGGGCAGCTTGAACTTGAACCTGAGCTCCAATGCTGGAGCTCATAGGCTGGATCAATTGACTACCAAAGCTGT TGCTACCAAGGCGGATGCTTCTGCACCAGCTAAAACTGGGTATGCTTCTGTACTGCATGAACTCTTGCTTTTTGAGGCCCTTAGAGAAGGTCTAGAAGAA GAAATGGACAGAGATGCTCGGGTTTGTGTGATGGGCGAAGATGTCGGCCACTACGGGGGTTCCTACAAGGTAACCAGAGGCCTAGCCGACAAGTTCGGAG ATCTCAGGGTTCTCGACACCCCAATTGCCGAAAATTCCTTCACTGGTATGGGCATTGGAGCTGCCATGACTGGCTTACGACCGATCATCGAAGGAATGAA CATGGGGTTCCTCCTTCTAGCATTCAACCAGATCTCAAACAACTGTGGCATGCTCCACTACACCTCCGGTGGCCAGTTCACCATCCCTGTCGTCATTCGT GGGCCCGGTGGAGTCGGGCGCCAGCTTGGAGCCGAACACTCGCAGCGTCTCGAGTCATACTTCCAATCCATCCCTGGAATTCAGATGGTCGCTTGCTCAA CCCCTTACAATGCCAAGGGGTTGATGAAAGCTGCCATCCGAAGCGAGAACCCTGTGATCCTCTTCGAGCACGTCCTTCTTTACAACCTGAAGGAAAAAAT CCCCGACGAAGAATACATCTGTAACCTCGAGGAAGCCGAGATGGTTAGGCCGGGAGAGCATATTACCATTTTAACCTATTCCCGGATGAGATATCACGTA ATGCAGGCTGCCAAGACTTTGGTGGACAGGGGTTATGACCCTGAAGTGATTGACATCAGGTCTTTGAAGCCGTTTGATCTCCACACGATCGGGAACTCGG TGAAGAAGACTCATCGGGTTCTGATCGTGGAGGAGTGCATGAGGACCGGAGGGATCGGTGCTAGCTTGACGGCAGCTATCAACGAGAATTTCATCGACTA TTTGGATGCTCCGATTGTGTGCTTGTCTTCGCAGGATGTGCCGACGCCATATGCGGGAACTTTGGAGGAATGGACTGTAGTGCAGCCTGCCCAGATTGTA ACGGCAGTCGAGCAGCTATGCCAGTAA
AA sequence Show only first row Show all	>Lus10023304 pacid=23181075 polypeptide=Lus10023304 locus=Lus10023304.g ID=Lus10023304.BGIv1.0 annot-version=v1.0 MATIFQGLGAAAAVTSSTRFHSNKSLRGSFPERRKSLFVVRSEGSLNLNLSSNAGAHRLDQLTTKAVATKADASAPAKTGYASVLHELLLFEALREGLEE EMDRDARVCVMGEDVGHYGGSYKVTRGLADKFGDLRVLDTPIAENSFTGMGIGAAMTGLRPIIEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPVVIR GPGGVGRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKEKIPDEEYICNLEEAEMVRPGEHITILTYSRMRYHV MQAAKTLVDRGYDPEVIDIRSLKPFDLHTIGNSVKKTHRVLIVEECMRTGGIGASLTAAINENFIDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIV TAVEQLCQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34590			Transketolase family protein (...		Lus10023304 [exp]	0	1
AT2G34250			SecY protein transport family ...		Lus10010932 [exp]	1.7	0.9341
AT1G51980			Insulinase (Peptidase family M...		Lus10038262 [exp]	5.0	0.9433
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Lus10025390 [exp]	9.2	0.9218
AT1G21750		ATPDI5, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10018156 [exp]	9.3	0.9427
AT4G32800	AP2_ERF		Integrase-type DNA-binding sup...		Lus10034949 [exp]	9.6	0.9007
AT1G78900		VHA-A	vacuolar ATP synthase subunit ...		Lus10034836 [exp]	9.9	0.9293
AT2G30200		EMB3147	EMBRYO DEFECTIVE 3147, catalyt...		Lus10042255 [exp]	14.1	0.9318
AT5G38830			Cysteinyl-tRNA synthetase, cla...		Lus10034343 [exp]	20.0	0.9265
AT3G54250			GHMP kinase family protein (.1...		Lus10034147 [exp]	21.0	0.9309
AT1G24360			NAD(P)-binding Rossmann-fold s...		Lus10036980 [exp]	21.4	0.9179

Compare expression of checked genes

Lus10023304 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.