Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46210 59 / 3e-11 CUL4, ATCUL4 cullin4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G084400 [exp] 100 / 1e-25 AT5G46210 1250 / 0.0 cullin4 (.1) Potri.004G132900 [exp] 91 / 3e-22 AT5G46210 1211 / 0.0 cullin4 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023305 pacid=23180960 polypeptide=Lus10023305 locus=Lus10023305.g ID=Lus10023305.BGIv1.0 annot-version=v1.0 ATGTCTCTCCCCACCAAACGTTCTGCCACTGCTGCTGCTTCTTCTGCTTCTTCCCCCACCACTTCCTCCGCCGCCGCCTGTTTCCGGCCGCCGATGAAGA AAGCCAAGTCTCAGGCCTGCTCCTCTCCTCTCGATTCCTCCTCCAATAAAAACGGCCTACACCACTTCACCGCTCCAAATTCCGCCAATACCGATGTCCT CTTCGACCCTTCCTCCATGTCCCTCGACGAAAATCCTACGCTCGTCGATGCCGCCCCTCCCACCGCCGCTAATTTATCTCGCAAGAAGGCCACTCTCCCT CAGCCGGCCAAGAAGCTCGTCATCAAGCTCAATAAAGAATTGACTGTATGTAATAGAATGTTAAGAGATGCAGATTCTATGGATCCGAGCTGGCCTTAA
AA sequence Show only first row Show all	>Lus10023305 pacid=23180960 polypeptide=Lus10023305 locus=Lus10023305.g ID=Lus10023305.BGIv1.0 annot-version=v1.0 MSLPTKRSATAAASSASSPTTSSAAACFRPPMKKAKSQACSSPLDSSSNKNGLHHFTAPNSANTDVLFDPSSMSLDENPTLVDAAPPTAANLSRKKATLP QPAKKLVIKLNKELTVCNRMLRDADSMDPSWP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46210		CUL4, ATCUL4	cullin4 (.1)		Lus10023305 [exp]	0	1
AT5G32470			Haem oxygenase-like, multi-hel...		Lus10021976 [exp]	9.3	0.7688
AT3G45190			SIT4 phosphatase-associated fa...		Lus10016088 [exp]	9.5	0.8405
AT1G53730		SRF6	STRUBBELIG-receptor family 6 (...		Lus10003926 [exp]	9.6	0.7760
AT1G67930			Golgi transport complex protei...		Lus10020753 [exp]	11.9	0.8400
AT5G45330		DCP5-L	decapping 5-like (.1)		Lus10035052 [exp]	15.0	0.8377
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Lus10029909 [exp]	18.5	0.7975
AT3G01810			unknown protein		Lus10037001 [exp]	21.0	0.8034
AT3G47890			Ubiquitin carboxyl-terminal hy...		Lus10042186 [exp]	22.0	0.8172
AT5G22780			Adaptor protein complex AP-2, ...		Lus10005371 [exp]	25.4	0.8283
AT5G41950			Tetratricopeptide repeat (TPR)...		Lus10001675 [exp]	26.5	0.8290

Compare expression of checked genes

Lus10023305 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.