Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46210 1077 / 0 CUL4, ATCUL4 cullin4 (.1) AT1G69670 447 / 2e-148 CUL3B, ATCUL3B ARABIDOPSIS THALIANA CULLIN 3B, cullin 3B (.1) AT1G26830 446 / 5e-148 CUL3A, ATCUL3A, ATCUL3 cullin 3A, cullin 3 (.1) AT4G02570 329 / 8e-103 AXR6, ATCUL1 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) AT1G43140 300 / 3e-92 Cullin family protein (.1) AT1G02980 283 / 2e-85 ATCUL2, CUL2 cullin 2 (.1) AT4G12100 177 / 5e-49 Cullin family protein (.1) AT3G46910 112 / 7e-28 Cullin family protein (.1) AT1G59790 83 / 1e-16 Cullin family protein (.1) AT2G04660 62 / 1e-09 APC2 anaphase-promoting complex/cyclosome 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038504 [exp] 986 / 0 AT5G46210 913 / 0.0 cullin4 (.1) Lus10012835 [exp] 446 / 7e-148 AT1G26830 1320 / 0.0 cullin 3A, cullin 3 (.1) Lus10036739 [exp] 445 / 1e-147 AT1G26830 1335 / 0.0 cullin 3A, cullin 3 (.1) Lus10037188 [exp] 444 / 3e-147 AT1G26830 1328 / 0.0 cullin 3A, cullin 3 (.1) Lus10030485 [exp] 442 / 4e-146 AT1G26830 1317 / 0.0 cullin 3A, cullin 3 (.1) Lus10024562 [exp] 321 / 9e-100 AT4G02570 1271 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Lus10032200 [exp] 321 / 1e-99 AT4G02570 1269 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Lus10028917 [exp] 317 / 6e-98 AT4G02570 1290 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Lus10004334 [exp] 308 / 1e-94 AT4G02570 1279 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G084400 [exp] 1166 / 0 AT5G46210 1250 / 0.0 cullin4 (.1) Potri.004G132900 [exp] 1135 / 0 AT5G46210 1211 / 0.0 cullin4 (.1) Potri.008G148300 [exp] 450 / 2e-149 AT1G26830 1342 / 0.0 cullin 3A, cullin 3 (.1) Potri.010G093200 [exp] 449 / 3e-149 AT1G26830 1345 / 0.0 cullin 3A, cullin 3 (.1) Potri.003G115500 [exp] 338 / 2e-106 AT4G02570 1209 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.001G117200 [exp] 333 / 2e-104 AT4G02570 1226 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.008G217300 [exp] 317 / 5e-98 AT4G02570 1272 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.010G023800 [exp] 315 / 1e-97 AT4G02570 1265 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.008G089600 [exp] 51 / 2e-06 AT2G04660 1178 / 0.0 anaphase-promoting complex/cyclosome 2 (.1) Potri.005G027900 [exp] 45 / 0.0001 AT4G02570 143 / 2e-38 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00888 [flax] [poplar] Cullin Cullin family CL0123 [flax] [poplar] HTH PF10557 [flax] [poplar] Cullin_Nedd8 Cullin protein neddylation domain
Representative CDS sequence Show only first row Show all	>Lus10023306 pacid=23181102 polypeptide=Lus10023306 locus=Lus10023306.g ID=Lus10023306.BGIv1.0 annot-version=v1.0 ATGCCGATCACATATGTTCACTCACAGGCTGTCAATGATCTTTGTCTGCACAAGATGGGGGGAAGTCTATATCAGCGTATAGAAAAAGAGTGTGAAGCGC ACATCTCTGCAGCACTACGATCCTTGGTTGGCCAAAGCCCAGATTTGTTGGTCTTCTTGTCACTAGTTGAGAGATGCTGGCAGGACTTCTGTGATCAGAT GTTAATGATTAGGGGCATTGCATTGTATTTGGATAGAACATACGTTAAACAAACCCCAAGTGTGCGTTCCTTATGGGACATGGGCTTGCAACTTTTCCGC CGACATCTTTCATCAGCTTCTGAGGTTGAGCACAAAACAGTAACCGGCCTTCTGCAGATGATCGAAAGAGAAAGATTAGGTGAAGCAGTTGATAGGACAC TCCTCAACCATCTTTTGAAGATGTTTACAGCTCTTGGAATATATACAGAAAGCTTCGAAAGACCATTCCTTGAAGGCACATCTGAATTTTATGCTGCTGA AGGAATGCAATACATGCAGCAGTCAGATGTTCCAGATTACTTGAAACATGTGGAGGTAAGGTTGCAGGAGGAACATGAAAGATGCTTACTTTACCTAGAT GCAAGCACTCGGAAGCCTCTAATAGCTACTGCAGAGAGCCAGCTTCTTGAGTGCCATATATCAGCAATTCTCGATAAGGGGTTCACAATGCTGATGGATG GTCACAGGATTGGAGACCTCCAGAGGATGTACTCTTTGTTCTTGAGGGTCAATGCCCTTGAATCATTACGTCAAGCCCTTAGTTCATATGTTAGGAGAAC CGGGCAGGGTATTGTGATGGATGAAGAGAAGGACAAGGATATGGTTTCATCTTTATTAGAAGTTAAGGCTTCTCTTGACGCAATATTGGAAGAAAGCTTT GGCAAGAATGAAGCATTTTCCAATACCATTAAGGAAGCCTTTGAGCATTTGATTAATCTTCGTCAGAACCGGCCCGCTGAGCTTATTGCTAAGTTTTTGG ATGAGAAGCTTCGTGCTGGGAATAAGGGTACTTCTGAAGAGGAATTGGAGGGTACACTTGACAAAGTCTTAGTTTTATTTAGGTTCATCCAGGGGAAAGA CGTTTTTGAAGCATTTTACAAGAAGGATCTTGCGAAAAGGTTATTGCTGGGTAAAAGTGCTTCTATTGATGCAGAGAAGTCTATGATATCTAAGGTTGAT TATGAAACTGTTCTCCTCAGTCGGTCAGACATTGAATTATCTAAGGAGATCAACGAGTCTTTCAAACAGTCCTCTCAAGCAAGGACAAAACTTCCATCCG GAATCGAGATGAGTGTCCATGTGTTGACAACTGGTTACTGGCCCACTTACCCACCAATGGATGTTAGGCTTCCTCATGAGCTGAATGTCTACCAGGATAT TTTCAAAGAATTTTACTTGAGCAAACATAGTGGAAGGCGCTTAATGTGGCAGAATTCGCTGGGGCATTGTGTTTTGAAAGCGGAGTTCCCAAAGGGTAAA AAGGAGCTTGCAGTGTCCCTATTCCAGACTGTTGTTTTGATGCTATTCAATGATGCACAAAAGCTCACCTTTGAAGACATCAAGGACGCTACAGGCATTG AGGATAAAGAATTAAGGCGGACGCTTCAATCCCTCGCATGTGGAAAAGTTCGGGTCCTGCAAAAGGTGAATGCTATCCAGATGAAGGAAACGGTGGAGGA GAACACAAGTACCACGGAAAGAGTATTTCAGGATCGTCAATACCAGGTGGATGCTGCAATTGTTCGGATAATGAAAACAAGGAAGGTGCTAAGCCACACG CTCCTTATCACCGAGCTTTTCCAGCAGCTGAAATTCCCAATAAAGCCGGCAGACTTGAAGAGGAGAATAGAGAGCCTGATCGACAGGGAGTACTTAGAGA GGGACAAGAACAACCCTCAGATTTACAATTACTTGGCTTGA
AA sequence Show only first row Show all	>Lus10023306 pacid=23181102 polypeptide=Lus10023306 locus=Lus10023306.g ID=Lus10023306.BGIv1.0 annot-version=v1.0 MPITYVHSQAVNDLCLHKMGGSLYQRIEKECEAHISAALRSLVGQSPDLLVFLSLVERCWQDFCDQMLMIRGIALYLDRTYVKQTPSVRSLWDMGLQLFR RHLSSASEVEHKTVTGLLQMIERERLGEAVDRTLLNHLLKMFTALGIYTESFERPFLEGTSEFYAAEGMQYMQQSDVPDYLKHVEVRLQEEHERCLLYLD ASTRKPLIATAESQLLECHISAILDKGFTMLMDGHRIGDLQRMYSLFLRVNALESLRQALSSYVRRTGQGIVMDEEKDKDMVSSLLEVKASLDAILEESF GKNEAFSNTIKEAFEHLINLRQNRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKVD YETVLLSRSDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKHSGRRLMWQNSLGHCVLKAEFPKGK KELAVSLFQTVVLMLFNDAQKLTFEDIKDATGIEDKELRRTLQSLACGKVRVLQKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHT LLITELFQQLKFPIKPADLKRRIESLIDREYLERDKNNPQIYNYLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46210		CUL4, ATCUL4	cullin4 (.1)		Lus10023306 [exp]	0	1
AT5G05660		EBI, ATNFXL2	NFX1-like 2, EARLY BIRD, Arabi...		Lus10040200 [exp]	2.4	0.8679
AT1G59610		DRP2B, CF1, ADL...	Dynamin related protein 2B, dy...		Lus10007887 [exp]	3.7	0.8975
AT4G26100		CKL1, CK1	casein kinase 1 (.1)		Lus10027628 [exp]	4.9	0.8378
AT3G63460		EMB2221	transducin family protein / WD...		Lus10019752 [exp]	5.3	0.8690
AT1G59820		ALA3	aminophospholipid ATPase 3 (.1...		Lus10013286 [exp]	6.6	0.8204
AT1G21080			DNAJ heat shock N-terminal dom...		Lus10030713 [exp]	6.9	0.8311
AT5G53480			ARM repeat superfamily protein...		Lus10008863 [exp]	8.9	0.8556
AT2G43160			ENTH/VHS family protein (.1.2....		Lus10026741 [exp]	9.5	0.8525
AT3G53760		ATGCP4	GAMMA-TUBULIN COMPLEX PROTEIN ...		Lus10042807 [exp]	12.0	0.8549
AT4G13350		NIG	NSP (nuclear shuttle protein)-...		Lus10033090 [exp]	13.8	0.8451

Compare expression of checked genes

Lus10023306 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.