Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18340 480 / 1e-169 Glycosyl hydrolase superfamily protein (.1) AT1G30080 479 / 7e-169 Glycosyl hydrolase superfamily protein (.1) AT1G32860 359 / 2e-121 Glycosyl hydrolase superfamily protein (.1) AT2G27500 351 / 4e-119 Glycosyl hydrolase superfamily protein (.1.2.3) AT5G42100 339 / 9e-114 ATBG_PPAP, ATBG_PAP ARABIDOPSIS THALIANA BETA-1,3-GLUCANASE_PUTATIVE, beta-1,3-glucanase_putative (.1.2) AT3G15800 328 / 1e-109 Glycosyl hydrolase superfamily protein (.1) AT4G26830 318 / 4e-105 O-Glycosyl hydrolases family 17 protein (.1) AT5G24318 305 / 7e-100 O-Glycosyl hydrolases family 17 protein (.1.2) AT5G55180 300 / 5e-98 O-Glycosyl hydrolases family 17 protein (.1.2) AT2G05790 300 / 9e-98 O-Glycosyl hydrolases family 17 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038501 [exp] 680 / 0 AT4G18340 484 / 6e-172 Glycosyl hydrolase superfamily protein (.1) Lus10028122 [exp] 544 / 0 AT4G18340 513 / 0.0 Glycosyl hydrolase superfamily protein (.1) Lus10042825 [exp] 516 / 0 AT4G18340 479 / 1e-170 Glycosyl hydrolase superfamily protein (.1) Lus10001660 [exp] 363 / 4e-124 AT1G32860 462 / 8e-163 Glycosyl hydrolase superfamily protein (.1) Lus10017344 [exp] 363 / 2e-123 AT1G32860 459 / 5e-161 Glycosyl hydrolase superfamily protein (.1) Lus10008277 [exp] 362 / 2e-122 AT1G32860 483 / 6e-170 Glycosyl hydrolase superfamily protein (.1) Lus10004869 [exp] 356 / 1e-120 AT2G27500 491 / 5e-174 Glycosyl hydrolase superfamily protein (.1.2.3) Lus10033244 [exp] 355 / 4e-120 AT1G32860 483 / 5e-170 Glycosyl hydrolase superfamily protein (.1) Lus10020618 [exp] 355 / 1e-119 AT2G27500 494 / 5e-175 Glycosyl hydrolase superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G084900 [exp] 540 / 0 AT1G30080 538 / 0.0 Glycosyl hydrolase superfamily protein (.1) Potri.004G132700 [exp] 520 / 0 AT1G30080 525 / 0.0 Glycosyl hydrolase superfamily protein (.1) Potri.011G152400 [exp] 375 / 6e-128 AT1G32860 502 / 8e-178 Glycosyl hydrolase superfamily protein (.1) Potri.009G163700 [exp] 366 / 5e-125 AT2G27500 499 / 1e-177 Glycosyl hydrolase superfamily protein (.1.2.3) Potri.001G449100 [exp] 368 / 6e-125 AT1G32860 483 / 3e-170 Glycosyl hydrolase superfamily protein (.1) Potri.004G202400 [exp] 365 / 2e-124 AT2G27500 540 / 0.0 Glycosyl hydrolase superfamily protein (.1.2.3) Potri.004G097400 [exp] 363 / 8e-124 AT2G27500 462 / 3e-163 Glycosyl hydrolase superfamily protein (.1.2.3) Potri.003G032600 [exp] 333 / 5e-112 AT3G15800 524 / 0.0 Glycosyl hydrolase superfamily protein (.1) Potri.001G192200 [exp] 320 / 4e-106 AT3G15800 514 / 0.0 Glycosyl hydrolase superfamily protein (.1) Potri.002G007300 [exp] 314 / 4e-103 AT4G29360 339 / 1e-111 O-Glycosyl hydrolases family 17 protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17
Representative CDS sequence Show only first row Show all	>Lus10023309 pacid=23180993 polypeptide=Lus10023309 locus=Lus10023309.g ID=Lus10023309.BGIv1.0 annot-version=v1.0 ATGGATGCAACGTTCATCAACTTCATCTTCCTGTTCTCAACCCTCGTCGGATCGGTGGCGTCGCTGGGGATCAACTACGGACAACTCGGCAACAACTTGC CTCAGCCATCAACGGCGGTCGACCTATTGACCTCGTTAAGGATAACCAAGGCTCGGATCTACGACACCAACCCACAGATACTAACCGCATTTGCGAATTC CCAAATTGACCTAATAGTCACTGTGGAGAACCAAATGCTCTCCACGCTTATGGACCCACAACAAGCCCTTCAGTGGGTCACGGCCCATGTCAAGCCTTAT GTTCGGTCCACGAGGATTACGGGTATCGCTGTTGGGAATGAAGTGTTTACCGATGACGACGACACCCTCTTGAATTACCTCGTCCCGGCCATGGTCAACA TCCACTCCGCCCTGGTCCAGCTAGGTATAAACCGCAACATTGAAGTGTCGACCCCACACTCGTTAGCCGTGCTTGAAACCTCGTACCCACCATCTGCTGG CGAATTCAAGTCCGAGGTAGCGCCCGACATGACGAAATTCCTCCAGTTCCTCAACGCAACCAACTCACCGTTCTGGATCAACGCCTACACCTACTTCGCC TACAAGGACGACCCCACGGGAATCTCCCTGGACTACGTCCTATTCAATCCCAACCCCGGAATGGATGACCCTTCCACCGGTCTACACTACGACAACATGC TCTACGCCCAGGTGGACGCCGTGATCTTCGCCATTTCGAAGCTCGGATACGGCGGGATCGAGGTGCGAGTATCAGAGACCGGATGGCCGTCGAACGGAGA CGCGGATGAAGTCGGCGCGACGGTCCAGAATGCGGCGTCGTATAACAGGAATCTGCTGCGTAGGCAGCTGGCCAATCAAGGGACGCCGTTGAGGCCACGC GCCAGGCTGGAGGTTTACCTGTTCGCCTTGTTTAACGAGGATATGAAGCCCGGGCCCACATCGGAACGGAATTACGGGCTTTACCAGCCGGATTGTAGTA TGGTTTACAATGTCGGACTTACTTCCGGCCGTTTGGGTGCCACTAATAACGCCGCCGCGACGGCGGTTTCTACCCCGGGGACTCATGGCGGCGGCGGCGC GTCTCCTCATTCGTTCTTCTTTCTTTCCTCCTCCGCCACAAAGGAGGTCAACATCGGATATCGACAATGCTTGATGTACTTAACATTCGCATATACGGTA TTCTCCCAAGTGATCGGGACAATCCGAAGACCATGA
AA sequence Show only first row Show all	>Lus10023309 pacid=23180993 polypeptide=Lus10023309 locus=Lus10023309.g ID=Lus10023309.BGIv1.0 annot-version=v1.0 MDATFINFIFLFSTLVGSVASLGINYGQLGNNLPQPSTAVDLLTSLRITKARIYDTNPQILTAFANSQIDLIVTVENQMLSTLMDPQQALQWVTAHVKPY VRSTRITGIAVGNEVFTDDDDTLLNYLVPAMVNIHSALVQLGINRNIEVSTPHSLAVLETSYPPSAGEFKSEVAPDMTKFLQFLNATNSPFWINAYTYFA YKDDPTGISLDYVLFNPNPGMDDPSTGLHYDNMLYAQVDAVIFAISKLGYGGIEVRVSETGWPSNGDADEVGATVQNAASYNRNLLRRQLANQGTPLRPR ARLEVYLFALFNEDMKPGPTSERNYGLYQPDCSMVYNVGLTSGRLGATNNAAATAVSTPGTHGGGGASPHSFFFLSSSATKEVNIGYRQCLMYLTFAYTV FSQVIGTIRRP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18340			Glycosyl hydrolase superfamily...		Lus10023309 [exp]	0	1
AT2G31960		ATGSL3, ATGSL03	glucan synthase-like 3 (.1.2)		Lus10037471 [exp]	1.0	0.8990
					Lus10039390 [exp]	1.7	0.8233
AT4G18340			Glycosyl hydrolase superfamily...		Lus10038501 [exp]	4.2	0.8822
AT4G22430			F-box family protein (.1)		Lus10028293 [exp]	6.5	0.6890
AT1G03840	C2H2ZnF	MGP	Magpie, C2H2 and C2HC zinc fin...		Lus10039869 [exp]	7.3	0.7666
					Lus10006631 [exp]	7.7	0.7772
AT5G20950			Glycosyl hydrolase family prot...		Lus10018102 [exp]	9.4	0.7365
AT5G08350			GRAM domain-containing protein...		Lus10040999 [exp]	10.0	0.8122
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Lus10012053 [exp]	10.9	0.7686
AT4G38660			Pathogenesis-related thaumatin...		Lus10013561 [exp]	11.2	0.7739

Compare expression of checked genes

Lus10023309 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.