Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30040 380 / 2e-132 ATGA2OX2 GIBBERELLIN 2-OXIDASE 2, gibberellin 2-oxidase (.1.2) AT1G78440 352 / 1e-121 ATGA2OX1 Arabidopsis thaliana gibberellin 2-oxidase 1 (.1) AT2G34555 348 / 7e-120 ATGA2OX3 gibberellin 2-oxidase 3 (.1) AT1G47990 245 / 1e-79 ATGA2OX4 Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 4 (.1) AT1G02400 241 / 5e-78 ATGA2OX4, ATGA2OX6, DTA1 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) AT5G08640 145 / 1e-40 ATFLS1, FLS flavonol synthase 1 (.1.2) AT1G80330 142 / 2e-39 ATGA3OX4 ARABIDOPSIS THALIANA GIBBERELLIN 3-OXIDASE 4, gibberellin 3-oxidase 4 (.1) AT4G10500 141 / 3e-39 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G15550 139 / 2e-38 ATGA3OX1, GA4 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) AT4G10490 139 / 2e-38 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038498 [exp] 313 / 3e-108 AT1G78440 258 / 2e-86 Arabidopsis thaliana gibberellin 2-oxidase 1 (.1) Lus10025016 [exp] 263 / 2e-86 AT1G02400 367 / 4e-127 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Lus10009998 [exp] 253 / 2e-82 AT1G02400 362 / 3e-125 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Lus10004511 [exp] 252 / 2e-82 AT1G02400 347 / 3e-119 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Lus10037816 [exp] 195 / 1e-60 AT1G02400 298 / 4e-101 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Lus10017094 [exp] 195 / 5e-60 AT1G02400 305 / 4e-103 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Lus10011476 [exp] 145 / 2e-40 AT1G15550 412 / 1e-143 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Lus10005037 [exp] 139 / 3e-38 AT3G11180 471 / 3e-166 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10024882 [exp] 138 / 5e-38 AT5G24530 271 / 2e-89 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G065000 [exp] 420 / 2e-148 AT1G30040 448 / 6e-159 GIBBERELLIN 2-OXIDASE 2, gibberellin 2-oxidase (.1.2) Potri.001G378400 [exp] 392 / 2e-137 AT1G78440 404 / 1e-141 Arabidopsis thaliana gibberellin 2-oxidase 1 (.1) Potri.011G095600 [exp] 392 / 1e-136 AT1G78440 404 / 4e-141 Arabidopsis thaliana gibberellin 2-oxidase 1 (.1) Potri.014G117300 [exp] 289 / 1e-96 AT1G02400 367 / 2e-127 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Potri.002G191900 [exp] 279 / 5e-93 AT1G02400 394 / 7e-138 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Potri.008G101600 [exp] 258 / 2e-84 AT1G47990 350 / 2e-120 Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 4 (.1) Potri.010G149700 [exp] 248 / 9e-81 AT1G47990 318 / 4e-108 Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 4 (.1) Potri.001G451900 [exp] 145 / 1e-40 AT4G10490 498 / 3e-178 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G176600 [exp] 145 / 2e-40 AT1G15550 452 / 1e-159 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Potri.003G057400 [exp] 143 / 9e-40 AT1G15550 451 / 2e-159 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10023311 pacid=23181046 polypeptide=Lus10023311 locus=Lus10023311.g ID=Lus10023311.BGIv1.0 annot-version=v1.0 ATGGTGGTTCTGTCTAGACCGGCGTTAGATCACTTCTCCTCAATCAAAACATGCAAACCCACTCCCGGATTCTTCTTCCCCGGGATCCCGGTCGTCGATT TCTCCGACCCCAACTCCAAATTCCTAATCGCCAAAGCTTGTAAAGACTTCGGCTTTTTCAAACTAACCAACCACGGAATCCCAAAGGAAACCATACGCCA GCTGGAGTCCCTGGCTGTAGAGTTCTTCAGCCTCCCGCAATCGGAGAAAGACTCCGCTGGCCCGCCTAACCCGTTCGGTTATGGCAACAAGCGAATCGGC CCCAATGGCGATATCGGCTGGATCGAGTACCTCCTCTTGCATTCCGATTCGATCAAATCAGCCGGCCCTCAGAATTTCCGGTGTGCGGTGAAGGAGTATG TGGCGGCGGTGAAGAAGATGACAATGGAGATGCTTGAGGCGATGGCGGAAGGGGTTGGGATAGAGCCGAGGAATGCGCTCAGCCGGTTGGTTGATGACGA GGGCAGCGACTCGTGCCTTCGGTTGAACCATTACCCGGGCTGCCCAGAGATTGTCTCGGTGCTTAGATCCAATAACACCACCGGCCTCCAAATCTGCCTT AAAGACGGCGCGTGGGTTTCCGTGCCGCCGGATCAGTCTTCCTTCTTTGTCATCGTCGGCGACGCCCTCCAGGTGATGACTAATGGCAGGTTTAAGAGTG TGAAGCATAGGGTGATGACGGACCCCGCGAAATCGAGAGTGTCGATGATTTATTTCGCGGGACCACCGATGAGCGAAAAGATTGTACCTTTGGAATCGAT AATGGAAGTCGGGGAGGAAAGCAGATACGAGGAGTTCACATGGTCGGAGTACAAACAATCGGCTTATAAGTCGAGGCTCGCTGATTATAGGCTCGGCCAT TTCGAGAAGAAGAAGATCAAGAACACCGACAACAATGGAGGGTTTTGGTTGTAG
AA sequence Show only first row Show all	>Lus10023311 pacid=23181046 polypeptide=Lus10023311 locus=Lus10023311.g ID=Lus10023311.BGIv1.0 annot-version=v1.0 MVVLSRPALDHFSSIKTCKPTPGFFFPGIPVVDFSDPNSKFLIAKACKDFGFFKLTNHGIPKETIRQLESLAVEFFSLPQSEKDSAGPPNPFGYGNKRIG PNGDIGWIEYLLLHSDSIKSAGPQNFRCAVKEYVAAVKKMTMEMLEAMAEGVGIEPRNALSRLVDDEGSDSCLRLNHYPGCPEIVSVLRSNNTTGLQICL KDGAWVSVPPDQSSFFVIVGDALQVMTNGRFKSVKHRVMTDPAKSRVSMIYFAGPPMSEKIVPLESIMEVGEESRYEEFTWSEYKQSAYKSRLADYRLGH FEKKKIKNTDNNGGFWL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30040		ATGA2OX2	GIBBERELLIN 2-OXIDASE 2, gibbe...		Lus10023311 [exp]	0	1
AT3G27010	TCP	ATTCP20, PCF1, ...	ARABIDOPSIS THALIANA TEOSINTE ...		Lus10015760 [exp]	5.1	0.7547
AT1G49320		ATUSPL1	unknown seed protein like 1 (....		Lus10040475 [exp]	6.6	0.7466
AT5G25190	AP2_ERF	ESE3	ethylene and salt inducible 3,...		Lus10005343 [exp]	13.9	0.7230
AT5G47910		ATRBOHD, RBOHD	respiratory burst oxidase homo...		Lus10032517 [exp]	14.8	0.7087
AT2G15780			Cupredoxin superfamily protein...		Lus10025269 [exp]	16.6	0.7009
AT5G56440			F-box/RNI-like/FBD-like domain...		Lus10001507 [exp]	19.9	0.6297
AT3G47570			Leucine-rich repeat protein ki...		Lus10030855 [exp]	23.2	0.6172
AT2G27500			Glycosyl hydrolase superfamily...		Lus10020618 [exp]	23.9	0.6631
AT3G22060			Receptor-like protein kinase-r...		Lus10039699 [exp]	30.4	0.6894
AT2G34930			disease resistance family prot...		Lus10006946 [exp]	31.4	0.6689

Compare expression of checked genes

Lus10023311 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.