Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46220 513 / 1e-180 Protein of unknown function (DUF616) (.1) AT4G38500 182 / 9e-52 Protein of unknown function (DUF616) (.1) AT1G28240 183 / 2e-51 Protein of unknown function (DUF616) (.1) AT1G53040 171 / 4e-47 Protein of unknown function (DUF616) (.1), Protein of unknown function (DUF616) (.2) AT2G02910 147 / 2e-39 Protein of unknown function (DUF616) (.1) AT4G09630 139 / 2e-35 Protein of unknown function (DUF616) (.1) AT1G34550 139 / 4e-35 EMB2756 EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1) AT5G42660 133 / 5e-34 Protein of unknown function (DUF616) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038497 [exp] 787 / 0 AT5G46220 547 / 0.0 Protein of unknown function (DUF616) (.1) Lus10001446 [exp] 185 / 5e-52 AT1G28240 706 / 0.0 Protein of unknown function (DUF616) (.1) Lus10024001 [exp] 179 / 1e-50 AT4G38500 771 / 0.0 Protein of unknown function (DUF616) (.1) Lus10025082 [exp] 176 / 2e-49 AT4G38500 764 / 0.0 Protein of unknown function (DUF616) (.1) Lus10011175 [exp] 171 / 5e-47 AT1G28240 730 / 0.0 Protein of unknown function (DUF616) (.1) Lus10015438 [exp] 156 / 1e-41 AT1G28240 698 / 0.0 Protein of unknown function (DUF616) (.1) Lus10036741 [exp] 149 / 1e-39 AT2G02910 545 / 0.0 Protein of unknown function (DUF616) (.1) Lus10028702 [exp] 151 / 2e-39 AT1G34550 750 / 0.0 EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1) Lus10009419 [exp] 150 / 4e-39 AT1G34550 753 / 0.0 EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G107800 [exp] 592 / 0 AT5G46220 531 / 0.0 Protein of unknown function (DUF616) (.1) Potri.001G399800 [exp] 187 / 3e-53 AT1G53040 574 / 0.0 Protein of unknown function (DUF616) (.1), Protein of unknown function (DUF616) (.2) Potri.011G119300 [exp] 186 / 5e-53 AT1G53040 588 / 0.0 Protein of unknown function (DUF616) (.1), Protein of unknown function (DUF616) (.2) Potri.011G053000 [exp] 186 / 1e-52 AT1G28240 775 / 0.0 Protein of unknown function (DUF616) (.1) Potri.004G044100 [exp] 184 / 7e-52 AT1G28240 779 / 0.0 Protein of unknown function (DUF616) (.1) Potri.009G138000 [exp] 175 / 5e-49 AT4G38500 725 / 0.0 Protein of unknown function (DUF616) (.1) Potri.004G177600 [exp] 173 / 2e-48 AT4G38500 750 / 0.0 Protein of unknown function (DUF616) (.1) Potri.010G094000 [exp] 151 / 1e-40 AT2G02910 565 / 0.0 Protein of unknown function (DUF616) (.1) Potri.019G084100 [exp] 145 / 2e-37 AT1G34550 707 / 0.0 EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1) Potri.013G113700 [exp] 144 / 6e-37 AT1G34550 708 / 0.0 EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04765 [flax] [poplar] DUF616 Protein of unknown function (DUF616)
Representative CDS sequence Show only first row Show all	>Lus10023312 pacid=23180992 polypeptide=Lus10023312 locus=Lus10023312.g ID=Lus10023312.BGIv1.0 annot-version=v1.0 ATGGCGAAACCAAAATCAACCCAATCTCCTCCGCCATTGTTCCAATCAAAGCTCCTCTGTTTCTCTCTGTTATACCTCCTCACATCATTCTCCTTAGCCT TCTACAACGCCCTATCATCCACCAAATGCCTCTTTCGTTCTTCCCCCTTCGACCCGATTCAATCCCCTCTCTTCACTTACCCTTCTTCCTATGGCGAGCA CAAGTACGCCCTCCATACCCACCGCAATTCTTGCTCCTCCTCCCCAGTTCAATTCTCAGAGTACTGGGATGTGGTGCGGGAGATTCAGAAACATAGGTTT GTGAAATCTTCGAGATTGAGGTATATGAAGGGAGAAAGGGAGACGTTTGGGGGGAATTTGAGTGTCCGTGAAAGGATTTCTTATTTTAATTATTCGGATG ATGATGGTGATCATACAGAGGTTCCTTGTGGGTTCTTCAGGGAGTTTCCTGTTAGCCCTTCTGACCGGATCGCGATGGAGAGCTGCAACGGGTTAGTGGT GGTGTCGGCGGTATTCAACGACCACGACAAAATCCGGCAGCCGAAGAGCATGGGGTCCGAAACCCGAGACTCTGTTTGTTTCTTCATGTTCGTGGACGAG ACAACACTGGCCGGGTTGGAGAACCACGGGGTAGTGAGATCAAGGGAGACGTCCATATTGTCCGTAGGTATTTGGAGGATTGTGAAGGTGGACACTACCG GATCGACATTGTACGAGAGCCCGGCGATGAACGGAGTGGTACCAAAGTATCTGGTACACAGGCTGTTCCCTAACTCGAAATTCAGCATATGGGTCGATGC CAAGATGCAGCTGATGGTGGATCCGTTGCTGTTGATTCACGCCTTGGTTGTGGCACGAGATGCCGATGTTGCGGTTTCGAGGCATCCGTTTTTTGTAAAT ACGATGGAGGAAGCAATGGCTACGGCTAGGTGGAGGAAATGGTGGGATGTTGAAGGTTTGAGGGTTCAGATTGAGACCTATTGTGAGAATGGGTTGCAGC CATGGTCGCCCAAGAAGCTCCCTTATCCTTCAGATGTTCCAGACAGTGCTGTAATACTGAGGAAGCACGGGCTAAGGAGCGACTTGTTCTCATGTCTGAT GTTCAACGAACTCGAGGCGTTCAACCCGCGGGACCAGCTCGCGTTTGCGTACGTTCGAGATGGGATGATGCCGAAGGTGAAGATGAACATGTTTGAGGTT GAGGTTCTGGAGCAGATTTCGTTGGAGTACAGACATGTGATTTTCAACAAGAAAAAGAAAGCTGCTCAGGAGGGGACTAAAGCTGCAGGAAGATCAAAGT TTCATGATTTTGTAGTTAATAGCAGTTGTTGTAGCAGGTGCCAGAATTATTTGTTGGAAATGTGGGGCGATTCCCAATAA
AA sequence Show only first row Show all	>Lus10023312 pacid=23180992 polypeptide=Lus10023312 locus=Lus10023312.g ID=Lus10023312.BGIv1.0 annot-version=v1.0 MAKPKSTQSPPPLFQSKLLCFSLLYLLTSFSLAFYNALSSTKCLFRSSPFDPIQSPLFTYPSSYGEHKYALHTHRNSCSSSPVQFSEYWDVVREIQKHRF VKSSRLRYMKGERETFGGNLSVRERISYFNYSDDDGDHTEVPCGFFREFPVSPSDRIAMESCNGLVVVSAVFNDHDKIRQPKSMGSETRDSVCFFMFVDE TTLAGLENHGVVRSRETSILSVGIWRIVKVDTTGSTLYESPAMNGVVPKYLVHRLFPNSKFSIWVDAKMQLMVDPLLLIHALVVARDADVAVSRHPFFVN TMEEAMATARWRKWWDVEGLRVQIETYCENGLQPWSPKKLPYPSDVPDSAVILRKHGLRSDLFSCLMFNELEAFNPRDQLAFAYVRDGMMPKVKMNMFEV EVLEQISLEYRHVIFNKKKKAAQEGTKAAGRSKFHDFVVNSSCCSRCQNYLLEMWGDSQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46220			Protein of unknown function (D...		Lus10023312 [exp]	0	1
AT3G59530		LAP3	LESS ADHERENT POLLEN 3, Calciu...		Lus10008151 [exp]	1.0	0.9720
AT2G40320		TBL33	TRICHOME BIREFRINGENCE-LIKE 33...		Lus10017428 [exp]	1.4	0.9698
AT5G60020		LAC17, ATLAC17	laccase 17 (.1)		Lus10019122 [exp]	4.0	0.9695
AT5G60020		LAC17, ATLAC17	laccase 17 (.1)		Lus10034439 [exp]	4.6	0.9591
AT1G79620			Leucine-rich repeat protein ki...		Lus10023848 [exp]	6.7	0.9695
AT3G50760		GATL2	galacturonosyltransferase-like...		Lus10016302 [exp]	7.9	0.9572
AT2G28315			Nucleotide/sugar transporter f...		Lus10021464 [exp]	8.5	0.9661
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10002199 [exp]	9.6	0.9396
AT1G48880		TBL7	TRICHOME BIREFRINGENCE-LIKE 7 ...		Lus10042789 [exp]	10.0	0.9391
AT5G37478			TPX2 (targeting protein for Xk...		Lus10007382 [exp]	10.0	0.9692

Compare expression of checked genes

Lus10023312 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.