Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29990 175 / 2e-57 PFD6, PDF6 prefoldin 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038496 [exp] 136 / 3e-42 AT1G29990 155 / 6e-50 prefoldin 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G131900 [exp] 181 / 1e-59 AT1G29990 213 / 9e-73 prefoldin 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0200 [flax] [poplar] Prefoldin PF01920 [flax] [poplar] Prefoldin_2 Prefoldin subunit
Representative CDS sequence Show only first row Show all	>Lus10023313 pacid=23181000 polypeptide=Lus10023313 locus=Lus10023313.g ID=Lus10023313.BGIv1.0 annot-version=v1.0 ATGGCATCCCCAGCCGCCGTTAGAGAATTGCAGCGCGATCTCGAAAACAAAGCTAACGATCTCAGCAAAATCCAGAAAGGCAAGCTTTCCGAACACTCCC CAAATTCTCTGAATATTGCAAAGAATCACCAAGTGAGGAAGAAGTACACTATCCAGCTTGGTGAGAACGAGCTTGTGCTGAAGGAGCTGGAATTGTTGAG AGAGGATGCAAATGTTTTCAAACTGATTGGTCCGGTGCTGGTGAAGCAAGATTTGGCTGAGGCTAATGCCAACGTCCGTAAGAGGATTGAGTATATATCT GCTGAGTTGAAGCGACATGATGCAACTCTTCAAGATCTGGAAGAAAAGCAGAACAGCAAAAGAGAGGCGGTGATGAAGGTACAGCAAAGAATCCAATCCC TTCAGGCTGGAAAAGGAAAAGCATAG
AA sequence Show only first row Show all	>Lus10023313 pacid=23181000 polypeptide=Lus10023313 locus=Lus10023313.g ID=Lus10023313.BGIv1.0 annot-version=v1.0 MASPAAVRELQRDLENKANDLSKIQKGKLSEHSPNSLNIAKNHQVRKKYTIQLGENELVLKELELLREDANVFKLIGPVLVKQDLAEANANVRKRIEYIS AELKRHDATLQDLEEKQNSKREAVMKVQQRIQSLQAGKGKA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29990		PFD6, PDF6	prefoldin 6 (.1)		Lus10023313 [exp]	0	1
AT2G43780			unknown protein		Lus10037305 [exp]	2.0	0.8524
AT1G20430			unknown protein		Lus10034561 [exp]	2.4	0.8626
AT1G32210		ATDAD1	DEFENDER AGAINST APOPTOTIC DEA...		Lus10010413 [exp]	3.2	0.8517
AT3G18760			Translation elongation factor...		Lus10038301 [exp]	3.9	0.8673
AT2G43780			unknown protein		Lus10035718 [exp]	6.7	0.8336
AT5G51960			unknown protein		Lus10036504 [exp]	7.1	0.8458
AT3G62810			complex 1 family protein / LVR...		Lus10021599 [exp]	8.6	0.8105
AT3G06610			DNA-binding enhancer protein-r...		Lus10037773 [exp]	10.8	0.8487
AT1G27695			glycine-rich protein (.1.2)		Lus10032855 [exp]	11.0	0.8450
AT5G37590			Tetratricopeptide repeat (TPR)...		Lus10020809 [exp]	12.0	0.8524

Compare expression of checked genes

Lus10023313 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.