Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34510 608 / 0 Protein of unknown function, DUF642 (.1) AT1G29980 596 / 0 Protein of unknown function, DUF642 (.1.2) AT4G32460 363 / 2e-124 Protein of unknown function, DUF642 (.1.2) AT5G11420 350 / 7e-119 Protein of unknown function, DUF642 (.1) AT5G25460 348 / 5e-118 Protein of unknown function, DUF642 (.1) AT1G80240 341 / 3e-115 Protein of unknown function, DUF642 (.1) AT3G08030 318 / 2e-106 Protein of unknown function, DUF642 (.1.2) AT2G41810 318 / 4e-106 Protein of unknown function, DUF642 (.1) AT2G41800 313 / 3e-104 Protein of unknown function, DUF642 (.1) AT5G14150 139 / 2e-37 Protein of unknown function, DUF642 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038495 [exp] 732 / 0 AT2G34510 605 / 0.0 Protein of unknown function, DUF642 (.1) Lus10013112 [exp] 361 / 5e-123 AT5G11420 606 / 0.0 Protein of unknown function, DUF642 (.1) Lus10008080 [exp] 360 / 8e-123 AT5G11420 604 / 0.0 Protein of unknown function, DUF642 (.1) Lus10005474 [exp] 358 / 5e-122 AT5G11420 581 / 0.0 Protein of unknown function, DUF642 (.1) Lus10029501 [exp] 342 / 7e-116 AT3G08030 537 / 0.0 Protein of unknown function, DUF642 (.1.2) Lus10039602 [exp] 342 / 1e-115 AT3G08030 530 / 0.0 Protein of unknown function, DUF642 (.1.2) Lus10035910 [exp] 343 / 2e-115 AT5G11420 452 / 9e-159 Protein of unknown function, DUF642 (.1) Lus10025753 [exp] 340 / 1e-114 AT5G11420 453 / 8e-160 Protein of unknown function, DUF642 (.1) Lus10029502 [exp] 321 / 2e-107 AT3G08030 475 / 1e-168 Protein of unknown function, DUF642 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G087500 [exp] 626 / 0 AT1G29980 578 / 0.0 Protein of unknown function, DUF642 (.1.2) Potri.006G250100 [exp] 361 / 2e-123 AT5G11420 598 / 0.0 Protein of unknown function, DUF642 (.1) Potri.018G031100 [exp] 354 / 1e-119 AT5G11420 600 / 0.0 Protein of unknown function, DUF642 (.1) Potri.006G050300 [exp] 338 / 3e-114 AT2G41810 530 / 0.0 Protein of unknown function, DUF642 (.1) Potri.003G059800 [exp] 339 / 4e-114 AT5G25460 513 / 0.0 Protein of unknown function, DUF642 (.1) Potri.006G050400 [exp] 334 / 8e-113 AT2G41810 521 / 0.0 Protein of unknown function, DUF642 (.1) Potri.001G174400 [exp] 330 / 9e-111 AT5G25460 507 / 0.0 Protein of unknown function, DUF642 (.1) Potri.001G263900 [exp] 327 / 8e-110 AT3G08030 515 / 0.0 Protein of unknown function, DUF642 (.1.2) Potri.009G058800 [exp] 326 / 1e-109 AT3G08030 498 / 9e-178 Protein of unknown function, DUF642 (.1.2) Potri.016G056100 [exp] 325 / 3e-109 AT2G41810 520 / 0.0 Protein of unknown function, DUF642 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [flax] [poplar] GBD PF04862 [flax] [poplar] DUF642 Protein of unknown function (DUF642)
Representative CDS sequence Show only first row Show all	>Lus10023314 pacid=23181067 polypeptide=Lus10023314 locus=Lus10023314.g ID=Lus10023314.BGIv1.0 annot-version=v1.0 ATGGTGCTGCCGTCGACGACGACGAGGACTAAATGGCTGCCTCTTTGCGCCCTCTTTCTGTTCACCCTTTTGGCCTCTGCAATCCTCGGCGATGACGGAC TGGTGACGAACGGAGATTTCGAAACCCCACCGTCAAACGGCTTCCCTACCGACGAATCCATCTTGGAGGGCCCCACGGAGATCCCCAGCTGGAAATCAAA CGGCACAGTCGAGCTAGTCTCATCGGGACAAAAACAAGGTGGGATGATCCTCATCGTTCCTCAAGGAACTCATGCCGTCCGATTGGGCAACGACGCCGAG ATCAGCCAAGAGTTAACGGTCGAGAAAGGCTCCGTCTACTCCGTCACGTTCAGCGCCGCTCGCACGTGCGCACAGCTGGAGTCGCTCAACGTCTCCGTCC CGCCGACTGCTTCGCAGACCATAGACCTTCAGACGCTGTATAATGTACAAGGGTGGGACCCGTACGCGTGGGCTTTCCAGGCAGATGACGACAAAATAAC GCTTGTCTTTAGGAATCCCGGCATGGAAGATGACCCCACCTGTGGGCCCATCATCGACGACATCGCCATCAAAAAGCTCTTCTCCCCTGATCGCCCCAAA GAGAATGCGGTGGTGAACGGCGATCTGGAGGAAGGACCATGGATGTTCAGGAACATTTCACTCGGGGTCTTACTCCCAACCAACCTAGACGATCAGACGT CGTCTCTACCTGGTTGGATCGTGGAATCGAACCGGGCAGTTCGGTATATTGACTCGAATCATTTCTCAGTTCCGGAAGGAAAGAGAGCCGTCGAGCTTCT ATCGGGGAAAGAAGGGATCATTTCGCAGATGGTGGAGACGAAGCCGAACAAGGATTACAAGCTTTCGTTTGCTTTGGGGCAAGCGGGGGATAAATGCAAA GATCCGCTGGCGGTGATGGCGTTTGCGGGAGATCAGGCGCAGAACATCCATTACACTCCCGATTCGAACTCTAGCTTTCAGACCGCTGCTCTCAACTTCA CGGCGAAAGCTGAGAGGACTCGGATTGCGTTCTACAGTATTTATTACAACACGAGGACCGACGATATGAGCTCCCTTTGCGGGCCGGTGATTGATGACGT CCGCGTTTGGTTTTCTGGGGCTGGAAGGATTCGGTTTGGGTTCGAGTCGGTCGGGATGGTGCTAGTGGTTGGGTTTTGGGGGTTTGTGGTGTTGTTCGGT TTGGTTTAG
AA sequence Show only first row Show all	>Lus10023314 pacid=23181067 polypeptide=Lus10023314 locus=Lus10023314.g ID=Lus10023314.BGIv1.0 annot-version=v1.0 MVLPSTTTRTKWLPLCALFLFTLLASAILGDDGLVTNGDFETPPSNGFPTDESILEGPTEIPSWKSNGTVELVSSGQKQGGMILIVPQGTHAVRLGNDAE ISQELTVEKGSVYSVTFSAARTCAQLESLNVSVPPTASQTIDLQTLYNVQGWDPYAWAFQADDDKITLVFRNPGMEDDPTCGPIIDDIAIKKLFSPDRPK ENAVVNGDLEEGPWMFRNISLGVLLPTNLDDQTSSLPGWIVESNRAVRYIDSNHFSVPEGKRAVELLSGKEGIISQMVETKPNKDYKLSFALGQAGDKCK DPLAVMAFAGDQAQNIHYTPDSNSSFQTAALNFTAKAERTRIAFYSIYYNTRTDDMSSLCGPVIDDVRVWFSGAGRIRFGFESVGMVLVVGFWGFVVLFG LV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34510			Protein of unknown function, D...		Lus10023314 [exp]	0	1
AT2G34510			Protein of unknown function, D...		Lus10038495 [exp]	1.0	0.8838
AT1G27310		NTF2A	nuclear transport factor 2A (....		Lus10035202 [exp]	5.1	0.8672
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10015718 [exp]	5.5	0.8245
AT1G51370			F-box/RNI-like/FBD-like domain...		Lus10027020 [exp]	7.1	0.8343
					Lus10036558 [exp]	7.9	0.8027
AT2G22900			Galactosyl transferase GMA12/M...		Lus10019265 [exp]	10.5	0.8188
AT4G23630		RTNLB1, BTI1	Reticulan like protein B1, VIR...		Lus10032313 [exp]	10.8	0.8195
AT5G23040		CDF1	CELL GROWTH DEFECT FACTOR 1, P...		Lus10009608 [exp]	11.5	0.8157
					Lus10000961 [exp]	11.6	0.7801
AT5G67470		ATFH6	ARABIDOPSIS FORMIN HOMOLOG 6, ...		Lus10008739 [exp]	12.1	0.8227

Compare expression of checked genes

Lus10023314 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.