Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46250 285 / 4e-93 RNA-binding protein (.1.2.3) AT3G19090 161 / 3e-45 RNA-binding protein (.1) AT2G43970 151 / 5e-41 RNA-binding protein (.1.2) AT5G21160 77 / 6e-15 LA RNA-binding protein (.1.2.3) AT4G35890 64 / 4e-11 winged-helix DNA-binding transcription factor family protein (.1) AT4G32720 64 / 5e-11 ATLA1 La protein 1 (.1.2) AT1G79880 58 / 4e-09 RNA recognition motif (RRM)-containing protein (.1), RNA recognition motif (RRM)-containing protein (.2), RNA recognition motif (RRM)-containing protein (.3) AT5G66100 58 / 4e-09 winged-helix DNA-binding transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038494 [exp] 588 / 0 AT5G46250 323 / 5e-108 RNA-binding protein (.1.2.3) Lus10027080 [exp] 174 / 4e-49 AT2G43970 333 / 7e-108 RNA-binding protein (.1.2) Lus10025608 [exp] 172 / 2e-48 AT2G43970 332 / 2e-107 RNA-binding protein (.1.2) Lus10012058 [exp] 167 / 4e-47 AT3G19090 427 / 2e-146 RNA-binding protein (.1) Lus10027925 [exp] 136 / 1e-36 AT3G19090 291 / 8e-96 RNA-binding protein (.1) Lus10022135 [exp] 84 / 2e-17 AT4G32720 389 / 6e-133 La protein 1 (.1.2) Lus10038624 [exp] 76 / 9e-15 AT4G32720 360 / 3e-121 La protein 1 (.1.2) Lus10011685 [exp] 74 / 5e-14 AT4G32720 382 / 1e-128 La protein 1 (.1.2) Lus10041277 [exp] 73 / 1e-13 AT5G21160 563 / 0.0 LA RNA-binding protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G080700 [exp] 335 / 1e-113 AT5G46250 325 / 5e-109 RNA-binding protein (.1.2.3) Potri.009G106500 [exp] 166 / 2e-47 AT3G19090 348 / 1e-116 RNA-binding protein (.1) Potri.007G144800 [exp] 166 / 2e-46 AT2G43970 357 / 2e-117 RNA-binding protein (.1.2) Potri.017G007400 [exp] 157 / 1e-43 AT2G43970 306 / 2e-98 RNA-binding protein (.1.2) Potri.004G144700 [exp] 155 / 3e-43 AT3G19090 363 / 3e-122 RNA-binding protein (.1) Potri.001G220100 [exp] 72 / 2e-13 AT5G21160 607 / 0.0 LA RNA-binding protein (.1.2.3) Potri.006G241800 [exp] 71 / 2e-13 AT4G32720 403 / 3e-138 La protein 1 (.1.2) Potri.009G018100 [exp] 71 / 7e-13 AT5G21160 660 / 0.0 LA RNA-binding protein (.1.2.3) Potri.018G037900 [exp] 69 / 1e-12 AT4G32720 382 / 6e-130 La protein 1 (.1.2) Potri.005G109400 [exp] 64 / 9e-11 AT4G35890 178 / 2e-49 winged-helix DNA-binding transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF05383 [flax] [poplar] La La domain
Representative CDS sequence Show only first row Show all	>Lus10023315 pacid=23180982 polypeptide=Lus10023315 locus=Lus10023315.g ID=Lus10023315.BGIv1.0 annot-version=v1.0 ATGGAAGGGGAAGTCGCCGGACCCTCCGCAACCACATCTCCGCCGCCGGAGTCTGGCTCGACTCCCCTCGGATCTCCCGAGGAGACTCCAGATGAGGTTC AATACCTGTCGTCTGGCGAAGACCACGACCACGACGCTGAACTTGTCCCTCATGACCACGACGTTGATCACGATGATGAAGATCACCGCCCTCTCCCCGA CCTAGCCGTTCAAACGGATGATATTAAGCAGAAAATTATAAAGCAGGTGGAGTATTACTTCAGCGATGAAAATTTGCCCACTGATAAATACATGATTAGT TTGATAAAGAAGAACAAAGAAGGTTTTGTTCCTTTAAAAATCATTGCTTCATTTAGGAAGATGAAGAAACTCACCCTCGATCATGAACTTATTTCGGCTG CTTTAAACGAGTCATCTCTCTTGGTTGTGAGTCCTGATGGCAAGAAGGTGAAACGCCTTAAACCTTTTCAAATGTCTGAAATACAGGATCCACAGCTGTT CACTGTTCTGGTGGAGAATCTTCCTGAAGATCATTCACTGGAGAATATCCGAATGATATTTGGAGAAGCTGGGAGGATAAAGAAAGTCACTTTTGGTGAC CCTCATGCAGGGGGAGTCTCGAAAAAAGGAAACAAAACAGATATCCTCATTAGCAGCAAGTTACACGCTCTCGTGGAGTATGACACCGAAGAGGCTGCTG AAAAAGCTGTGGCTAGTTTTAATAATGAGCAAGACTGGAGAAACGGTATGCACGTGAAACGTCTCAAACGAGTGGGCAAGTCTACACAGAAGAAAACCTG GAAAGATCATGACATTGAGAAGAGTAGCTGTGCTCGTGTGTCTAATCAGACAGTAGCCGAGGATGTCCATCACTCACAGGACCACCATGATCTGTTGCCA GACGAAGAGGACGCAGAACATGTTTCCAGGGACAAAAATGGACACAGAGGGGGACGAAACAGAGGTCGATGTCGAAGGAACAGATATCACAACTCTAATG GACTAGGCCATGGAACTACTTCCTCAGGTCATGCAGTCGAACCGTCGAAGCCACCTCCTGGACCGAAAATGCCCGATGGAACTAGAGGATTTGCAATGGG CCGGGGCCGTCCTCCACAATCGGCAAATGACTAA
AA sequence Show only first row Show all	>Lus10023315 pacid=23180982 polypeptide=Lus10023315 locus=Lus10023315.g ID=Lus10023315.BGIv1.0 annot-version=v1.0 MEGEVAGPSATTSPPPESGSTPLGSPEETPDEVQYLSSGEDHDHDAELVPHDHDVDHDDEDHRPLPDLAVQTDDIKQKIIKQVEYYFSDENLPTDKYMIS LIKKNKEGFVPLKIIASFRKMKKLTLDHELISAALNESSLLVVSPDGKKVKRLKPFQMSEIQDPQLFTVLVENLPEDHSLENIRMIFGEAGRIKKVTFGD PHAGGVSKKGNKTDILISSKLHALVEYDTEEAAEKAVASFNNEQDWRNGMHVKRLKRVGKSTQKKTWKDHDIEKSSCARVSNQTVAEDVHHSQDHHDLLP DEEDAEHVSRDKNGHRGGRNRGRCRRNRYHNSNGLGHGTTSSGHAVEPSKPPPGPKMPDGTRGFAMGRGRPPQSAND

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46250			RNA-binding protein (.1.2.3)		Lus10023315 [exp]	0	1
AT5G46250			RNA-binding protein (.1.2.3)		Lus10038494 [exp]	1.0	0.9560
AT2G28910		CXIP4	CAX interacting protein 4 (.1)		Lus10005458 [exp]	1.4	0.9507
AT5G58730			pfkB-like carbohydrate kinase ...		Lus10018235 [exp]	3.2	0.9231
AT2G27450		CPA, ATNLP1, NL...	nitrilase-like protein 1 (.1.2...		Lus10004862 [exp]	7.5	0.9234
AT4G27780		ACBP2	acyl-CoA binding protein 2 (.1...		Lus10005910 [exp]	7.9	0.8967
AT5G47730			Sec14p-like phosphatidylinosit...		Lus10039106 [exp]	9.4	0.9130
AT3G57090		FIS1A, BIGYIN	FISSION 1A, Tetratricopeptide ...		Lus10036023 [exp]	9.6	0.9250
AT1G32330	HSF	ATHSFA1D	heat shock transcription facto...		Lus10040091 [exp]	11.0	0.8935
AT4G14880		OLD3, CYTACS1, ...	ONSET OF LEAF DEATH 3, O-acety...		Lus10015947 [exp]	11.2	0.9114
AT3G56490		HIT3, HINT1	HISTIDINE TRIAD NUCLEOTIDE-BIN...		Lus10035409 [exp]	13.4	0.9061

Compare expression of checked genes

Lus10023315 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.