Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18270 345 / 1e-115 ATTRANS11 ARABIDOPSIS THALIANA TRANSLOCASE 11, translocase 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038493 [exp] 675 / 0 AT4G18270 410 / 8e-140 ARABIDOPSIS THALIANA TRANSLOCASE 11, translocase 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G080600 [exp] 412 / 8e-141 AT4G18270 414 / 2e-140 ARABIDOPSIS THALIANA TRANSLOCASE 11, translocase 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00953 [flax] [poplar] Glycos_transf_4 Glycosyl transferase family 4
Representative CDS sequence Show only first row Show all	>Lus10023316 pacid=23181005 polypeptide=Lus10023316 locus=Lus10023316.g ID=Lus10023316.BGIv1.0 annot-version=v1.0 ATGGATTTACCACACACTGCGAAAGTCTCCACTAACGATGCTCTTACAGTAACAGCTCACCGGCTTGGGTTGATTGGGAAGGGTCATAAAAGACATAGGA TCAAGTATGGGATTTGGAACAATTTTGGGCTGATAACCTTTTTGACGTCGCTTGTTTTGTTCGTTGATTGGTGTGTGTGGAAGATCGTTCGAATTCCTTT ACCGCCATTTCACCTGTCTCGGCCCTTTTTCCTATCCGCAGCTATGGTAGCCTTTGCAGGATACGTTTGTGTCCCCTTGCTCGATGTTTTGATGGTTCAT GATACTGTGAGGAGGATAGGATATTTTATGTATTCCAGGAAGAGGCCAACGCCCACCATGGGTGGCTTGTTCATGGTACCTATTGGTGTTGCTGTTTCCA TCTTCTTTGCTGGTTTTACCTCTGTTGAAGTTTCTGCAGCAGCATTAGCCACTGTTGTATTTGCTGCAATCGGTTTACTAGATGACATTGTAAGGATTGT CAAGAAACATCACTGTGGCTTGTCCATGTGGACAAAATGTCTTTTGGAGGTGGCTTCAGGAATTGGGTTTGCAGTTTGGTTAGACACCGCAAAGATTGCG TCGCCTTACAGCATGAAAATGTTGGTTCCGCTACCTGCACCGATGGGCCTTGTTTTCATGGGCAAGTTTTATTGGTTGTTGACGTCTCTATGTTTCGTCT CCATGGGATGCGGGATTGACCTAACAGATGGACCTGATGGGCTAGCTGCGGGAATTGCTGCATTGGCTTTCATAGCAATGTCAGTTGCAGTGCTACCAAT TTGTTCCGAACTTGGCATATTTGGAGGATCAATGGCAGGTGCCTGTGTCGGCTTTCTGTTACACAACCGGTACAAGGCATCAGTCCTGCTAGGAAACACA GGATCTTTGGCCTTGGGAGGAGCATTAGCTGCAATGGCTGCTTGTACTGGGATGTTCTTTCCATTGTTTATATCGTCCGGAATCATTGTTTTGGAAGCAT TGTCGGTCCTAATGCAGGTGGTAAACCTGAAGGAAAGGAAAAGCTTGAAAGCGGGGTTTCGACGGTACCTGACGTGCATCGCACCTCTACACCGCCACCT GCAGTTGTGGGGAGTGAAGGAACCGATCATCGTTGCAGGTGCATACGTTATATCGAGCTTTCTGGCTTTGTCAGGAGGATATGTGGCTCTCATCTCAGCT TAA
AA sequence Show only first row Show all	>Lus10023316 pacid=23181005 polypeptide=Lus10023316 locus=Lus10023316.g ID=Lus10023316.BGIv1.0 annot-version=v1.0 MDLPHTAKVSTNDALTVTAHRLGLIGKGHKRHRIKYGIWNNFGLITFLTSLVLFVDWCVWKIVRIPLPPFHLSRPFFLSAAMVAFAGYVCVPLLDVLMVH DTVRRIGYFMYSRKRPTPTMGGLFMVPIGVAVSIFFAGFTSVEVSAAALATVVFAAIGLLDDIVRIVKKHHCGLSMWTKCLLEVASGIGFAVWLDTAKIA SPYSMKMLVPLPAPMGLVFMGKFYWLLTSLCFVSMGCGIDLTDGPDGLAAGIAALAFIAMSVAVLPICSELGIFGGSMAGACVGFLLHNRYKASVLLGNT GSLALGGALAAMAACTGMFFPLFISSGIIVLEALSVLMQVVNLKERKSLKAGFRRYLTCIAPLHRHLQLWGVKEPIIVAGAYVISSFLALSGGYVALISA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18270		ATTRANS11	ARABIDOPSIS THALIANA TRANSLOCA...		Lus10023316 [exp]	0	1
AT5G15730		CRLK2, AtCRLK2	calcium/calmodulin-regulated r...		Lus10008491 [exp]	1.4	0.9257
AT1G34320			Protein of unknown function (D...		Lus10018317 [exp]	1.4	0.9389
AT4G12790			P-loop containing nucleoside t...		Lus10036411 [exp]	5.2	0.9247
AT3G15920			Phox (PX) domain-containing pr...		Lus10023125 [exp]	7.0	0.8985
AT1G31120		KUP10	K+ uptake permease 10, K+ upta...		Lus10038362 [exp]	8.1	0.9152
AT5G25270			Ubiquitin-like superfamily pro...		Lus10040001 [exp]	9.5	0.9120
AT3G08790			ENTH/VHS/GAT family protein (....		Lus10011689 [exp]	10.9	0.9128
AT1G72710		CKL2	casein kinase 1-like protein 2...		Lus10006018 [exp]	12.6	0.9176
AT3G26090		ATRGS1, RGS1	REGULATOR OF G-PROTEIN SIGNALI...		Lus10006452 [exp]	13.6	0.9030
AT3G06810		IBR3	IBA-RESPONSE 3, acyl-CoA dehyd...		Lus10020908 [exp]	14.1	0.9243

Compare expression of checked genes

Lus10023316 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.