Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18240 1211 / 0 ATSS4, SSIV ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) AT1G11720 380 / 3e-115 ATSS3 starch synthase 3 (.1.2) AT5G65685 228 / 3e-65 UDP-Glycosyltransferase superfamily protein (.1.2) AT5G24300 198 / 3e-53 SSI1, SSI, ATSS1 STARCH SYNTHASE 1, Glycogen/starch synthases, ADP-glucose type (.1.2) AT3G01180 199 / 8e-53 ATSS2 starch synthase 2 (.1) AT1G32900 192 / 2e-51 GBSS1 granule bound starch synthase 1, UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038491 [exp] 1837 / 0 AT4G18240 1278 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Lus10028133 [exp] 1394 / 0 AT4G18240 1285 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Lus10042837 [exp] 1392 / 0 AT4G18240 1281 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Lus10006780 [exp] 370 / 1e-110 AT1G11720 1529 / 0.0 starch synthase 3 (.1.2) Lus10020044 [exp] 343 / 3e-101 AT1G11720 1508 / 0.0 starch synthase 3 (.1.2) Lus10018116 [exp] 220 / 1e-60 AT5G24300 855 / 0.0 STARCH SYNTHASE 1, Glycogen/starch synthases, ADP-glucose type (.1.2) Lus10022398 [exp] 219 / 2e-60 AT5G24300 874 / 0.0 STARCH SYNTHASE 1, Glycogen/starch synthases, ADP-glucose type (.1.2) Lus10033014 [exp] 205 / 6e-55 AT3G01180 973 / 0.0 starch synthase 2 (.1) Lus10015371 [exp] 191 / 3e-50 AT3G01180 928 / 0.0 starch synthase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G351800 [exp] 1262 / 0 AT4G18240 1293 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Potri.018G149500 [exp] 419 / 2e-134 AT4G18240 449 / 4e-146 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Potri.004G014100 [exp] 380 / 3e-114 AT1G11720 1460 / 0.0 starch synthase 3 (.1.2) Potri.007G009600 [exp] 300 / 9e-89 AT5G65685 507 / 2e-174 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.015G012400 [exp] 215 / 5e-59 AT5G24300 904 / 0.0 STARCH SYNTHASE 1, Glycogen/starch synthases, ADP-glucose type (.1.2) Potri.017G084100 [exp] 203 / 2e-54 AT3G01180 985 / 0.0 starch synthase 2 (.1) Potri.001G449500 [exp] 177 / 3e-46 AT1G32900 922 / 0.0 granule bound starch synthase 1, UDP-Glycosyltransferase superfamily protein (.1) Potri.011G152200 [exp] 171 / 3e-44 AT1G32900 880 / 0.0 granule bound starch synthase 1, UDP-Glycosyltransferase superfamily protein (.1) Potri.011G079450 [exp] 80 / 2e-18 AT4G18240 77 / 1e-18 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Potri.006G097600 [exp] 46 / 0.0001 AT5G01220 750 / 0.0 sulfoquinovosyldiacylglycerol 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00534 [flax] [poplar] Glycos_transf_1 Glycosyl transferases group 1 CL0113 [flax] [poplar] GT-B PF08323 [flax] [poplar] Glyco_transf_5 Starch synthase catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10023319 pacid=23180996 polypeptide=Lus10023319 locus=Lus10023319.g ID=Lus10023319.BGIv1.0 annot-version=v1.0 ATGGCGACGAAGCCATCATCGTCTTGCTTCATCAACCAAGCTCTTGCAGGCTTTAGCTATGGCGGCAATCAGAGAAATGTTCGCTTCTCACCTCCTCAGC ACCATCAGCTTCTGCTCCCTGCGATTCGACACCGCCATTTCAGTTGCCGGTACCAGCTCAAGAAACAGCAACTGAAGAAAGCTTCCACTGAATCGACGGC AGAATCTTATGAGGCCGCTGCTCCACGCAAAGATGTTCCTAATCTTGACGCCGATGCTAGCATCGATGAGGAGGACACCAGTAGAAAAGATTCGCAAAGC CGGACTGAGACTGAGGAATGCGTCGGCGGACAAGAGTTGGAGACTACCGTAGATGTGGAGCACATCCACGATGACGATTCTGAGCATCGAGAAACACCTA CTGAATCTGAAGAAGCCGAATCTCTGGCTTTGAATCTAAACGTAGACGGTGAAAAGAGACTTTCAAGTGTTCAGCTGGGGGATTTGATTGGCATGATAAG GAAAGCAGAGAAAAATGTCCATCTTCTCAATGATGCTAGGATTCGTGCTGTTGAGGATCTTGATAAAATTCTCTCGGAGAAGGAATCACTGCAAGGAGAA ATTAATGTTCTGGAGACAAGATTGGCTGAAACGGATGCAAAGTTAAGAGTTGCTTCCCAGGAGAAGACGCATGTGCAACTCCTAGAGAATCAGCTTGAAG AACTAAGGAATGAGCTGACTCACAGGAGTCCTGCAGTAGGGGATTTGCTTCATCATCGTGAGAACCAACCAAGAAACAAAGAAGCCTCTCTGGTTCCATA TGCTGATACTACTTCTCTCGGTGAGGAGCTCAACTCTTTGAGAACAGAGAATATGTTTCTGAAACAGGATCTGGAAGTACTTAAAGCAGAGCTTAATGCT ATCAGAAACACGGATGAGCGAGTAATAACACTCGAGAAGGACCGATCAACAATTAAGTCATCCTTAAGGGACTTGGAGTCCTTAGTGTCAACTTCTCAGG CAGATGTTTCTAAATTGTCTAGTCTAAAAGTTAAACATAAGGACTTGTGGGCGAAAGTGGAGAGTCAGCAAAGCCTTCTTGATAAGGTAACCAAGCAGGC AGATCGAGCTCTCATTGTGTTGCAACAAAACCAAGAGTTGCGGGAAAAGGTGCATAAGTTGGAGGAATCCTTAGAAGAAGCTAACATCTATAAGCTGTCA TCCGAAAAACTGCAAGACTACAATGAAGTAATGCAGCAAAAAATAAAGCTCCTGGAAGAACATCTCCAAAGGTCTGATGATGAGATACATTCTTATGTAC AACTGTATCATGAATCTATACAGGAATTTCAGGATACCCTGAGCAACCTGATAGAAGAAAGCAAAGAAAGAGCTTTAGACGGACCTGTAGATGATATGCC TTCGGACTTTTGGAGTCGTTTACTGCTTAAAATTGATGGCTGGCTACTGGAGAAAAAAATGTCTACAGATGATGCAAAGCTTTTGAGAGACCTGGTACGG AAGAGAGATAGGAAAATTTATGATGCATACATGCAGTGTGAGGAAAAGGATGAGCATGATTCCATATCAACTTTCCAAAAGCTCACTTCACAACCTGAAA GTTTAGGGTTGCATGTTATTCACATAGCGGCAGAGATGGCTCCAGTTGCTAAGGTTGGTGGTTTAGGAGATGTTGTCAGTGGCCTTAGTAAAGCACTACA AAAAAAAGGACACCTCGTGGAGATTATTCTGCCCAAATATGATTGCATGCAATATGATCGAATATATGACTTGAAGGCCCTAGATCTGGTAGTAGAGTCA TACTTTGAAGGAAGACTGTACAAAAACAAGATCTGGATTGGCGTTGTTGAAGGCCTTCCTGTATACTTTATTGAGCCGCTTCACCCTGGAAAGTTCTTTT GGCGAGGAGCATTTTATGGGGAACATGATGATTTTAAACGCTTCTCATTTTTCAGCCGCGCAGCTCTTGAGCTGCTTCATCAATCTGGCAAAAAACCTGA CATTATTCATTGTCACGATTGGCAGACAGCTTTCATAGCCCCACTTTACTGGGAAATATATGCCCCTAAAGGATTAAATTCAGCTAGAATATGCTTTACG TGCCACAACTTTGAGTACCAAGGAGCTGCACCTGCTTCGGAACTGGCTTCTTGCGGTCTTGATGTCCAACATCTTAATAGGCCAGATAGAATGCAGGACA ATTCTGCACATGATAGGGTTAATCCTGTAAAGGGTGCAGTTGTGTTCTCAAACATCGTGACAACTGTCTCTCCTACCTATGCTCAAGAGGTTCTCACGGC AGCGGGTGGTAAAGGCCTCCATTCAACTCTTAATTCTCACTCCAGGAAGTTTATAGGAATTCTTAATGGGATAGATCTTGATGCTTGGAATCCTTCAACT GATGGTTTCCTCAGTACCCAGTACAGTGCTAATGATCTCGAGGGAAAAGCGTATAACAAAACAGCTCTAAGAAGAGACCTTGGTCTTTCCACTGCCAATG TCAGGCAGCCATTGGTAGGGTGCATAACGAGATTAGTGCCACAAAAAGGTGTTCATCTCATCAGACATGCAATTTACCGGACATTAGAGCTTGGGGGACA ATTCGTGCTACTTGGTTCCAGCCCAGTTGCACAGATTCAGCAAGAATTCGAGGGGATTGCAAACCAGTTCCAGAACAATGGAAATGTTCGACTTATTCTG AAGTATGACGAAGCCCTATCCCATTCCATTTATGCAGCATCTGACATGTTCATCATCCCATCCGTCTTTGAGCCATGTGGACTGACACAGATGATTGCCA TGCGTTATGGTTCAGTTCCGATTGTGAGGAAGACAGGCGGCCTGAATGACAGCGTCTTTGATGTCGATGATGATATGGTACCTCTCCAGTTCCGGAATGG ATTTACCTTCTTGAACCCAGATGAAGAGGCGTTCAGCAGCGTTCTGGAGCGAGCTTTCAAACACTACAAGAATGACACTGAAGGTTGGCAAGAACTTGTC CGACGAATCATGAAACTGGACTTCAGCTGGGGAACTTCAGCCGCTCACTACGAGGAGCTTTACTCCAAGTCCGTGGCCAGGGCAAGGGCTGTTAACAGAG CGTAA
AA sequence Show only first row Show all	>Lus10023319 pacid=23180996 polypeptide=Lus10023319 locus=Lus10023319.g ID=Lus10023319.BGIv1.0 annot-version=v1.0 MATKPSSSCFINQALAGFSYGGNQRNVRFSPPQHHQLLLPAIRHRHFSCRYQLKKQQLKKASTESTAESYEAAAPRKDVPNLDADASIDEEDTSRKDSQS RTETEECVGGQELETTVDVEHIHDDDSEHRETPTESEEAESLALNLNVDGEKRLSSVQLGDLIGMIRKAEKNVHLLNDARIRAVEDLDKILSEKESLQGE INVLETRLAETDAKLRVASQEKTHVQLLENQLEELRNELTHRSPAVGDLLHHRENQPRNKEASLVPYADTTSLGEELNSLRTENMFLKQDLEVLKAELNA IRNTDERVITLEKDRSTIKSSLRDLESLVSTSQADVSKLSSLKVKHKDLWAKVESQQSLLDKVTKQADRALIVLQQNQELREKVHKLEESLEEANIYKLS SEKLQDYNEVMQQKIKLLEEHLQRSDDEIHSYVQLYHESIQEFQDTLSNLIEESKERALDGPVDDMPSDFWSRLLLKIDGWLLEKKMSTDDAKLLRDLVR KRDRKIYDAYMQCEEKDEHDSISTFQKLTSQPESLGLHVIHIAAEMAPVAKVGGLGDVVSGLSKALQKKGHLVEIILPKYDCMQYDRIYDLKALDLVVES YFEGRLYKNKIWIGVVEGLPVYFIEPLHPGKFFWRGAFYGEHDDFKRFSFFSRAALELLHQSGKKPDIIHCHDWQTAFIAPLYWEIYAPKGLNSARICFT CHNFEYQGAAPASELASCGLDVQHLNRPDRMQDNSAHDRVNPVKGAVVFSNIVTTVSPTYAQEVLTAAGGKGLHSTLNSHSRKFIGILNGIDLDAWNPST DGFLSTQYSANDLEGKAYNKTALRRDLGLSTANVRQPLVGCITRLVPQKGVHLIRHAIYRTLELGGQFVLLGSSPVAQIQQEFEGIANQFQNNGNVRLIL KYDEALSHSIYAASDMFIIPSVFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDVDDDMVPLQFRNGFTFLNPDEEAFSSVLERAFKHYKNDTEGWQELV RRIMKLDFSWGTSAAHYEELYSKSVARARAVNRA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18240		ATSS4, SSIV	ARABIDOPSIS THALIANA STARCH SY...		Lus10023319 [exp]	0	1
AT3G13690			Protein kinase protein with ad...		Lus10018944 [exp]	1.7	0.8856
AT5G08470		EMB2817, PEX1	EMBRYO DEFECTIVE 2817, peroxis...		Lus10011485 [exp]	2.4	0.8784
AT3G27180			S-adenosyl-L-methionine-depend...		Lus10041566 [exp]	4.1	0.9043
AT3G27180			S-adenosyl-L-methionine-depend...		Lus10012527 [exp]	4.2	0.8942
AT4G35910			Adenine nucleotide alpha hydro...		Lus10042060 [exp]	4.5	0.8810
AT5G48040			Ubiquitin carboxyl-terminal hy...		Lus10012201 [exp]	11.0	0.8685
AT5G63420	Trihelix	EMB2746	embryo defective 2746, RNA-met...		Lus10016758 [exp]	16.9	0.8440
AT5G02860			Pentatricopeptide repeat (PPR)...		Lus10013894 [exp]	17.2	0.8545
AT5G57930		APO2, EMB1629	embryo defective 1629, ACCUMUL...		Lus10019959 [exp]	19.3	0.8749
AT4G18240		ATSS4, SSIV	ARABIDOPSIS THALIANA STARCH SY...		Lus10038491 [exp]	19.3	0.8492

Compare expression of checked genes

Lus10023319 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.