Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46330 1016 / 0 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT4G20140 552 / 2e-176 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT1G35710 521 / 7e-166 Protein kinase family protein with leucine-rich repeat domain (.1) AT5G44700 522 / 6e-165 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT2G33170 509 / 4e-161 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT1G17230 503 / 2e-159 Leucine-rich receptor-like protein kinase family protein (.1) AT5G07280 491 / 1e-153 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G48940 482 / 5e-151 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G73080 477 / 4e-149 ATPEPR1, PEPR1 PEP1 receptor 1 (.1) AT1G75640 461 / 3e-143 Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038488 [exp] 1327 / 0 AT5G46330 726 / 0.0 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Lus10011386 [exp] 528 / 2e-167 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10036251 [exp] 520 / 3e-164 AT4G20140 1495 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10030845 [exp] 487 / 6e-154 AT3G47570 796 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030854 [exp] 478 / 2e-151 AT3G47110 758 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032306 [exp] 478 / 3e-150 AT3G47570 792 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10038392 [exp] 481 / 6e-150 AT4G20140 1376 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10033384 [exp] 476 / 6e-150 AT3G47570 739 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004388 [exp] 486 / 8e-150 AT3G47570 815 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G065400 [exp] 1284 / 0 AT5G46330 1176 / 0.0 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Potri.011G068500 [exp] 531 / 1e-169 AT5G46330 505 / 1e-159 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Potri.011G139700 [exp] 516 / 3e-164 AT1G17230 1363 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.013G020900 [exp] 512 / 2e-163 AT3G47570 593 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G235100 [exp] 508 / 5e-161 AT1G75640 1231 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.003G156200 [exp] 511 / 1e-160 AT4G20140 1394 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G053400 [exp] 504 / 9e-160 AT2G33170 1311 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.001G075000 [exp] 508 / 2e-159 AT4G20140 1371 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.008G009300 [exp] 503 / 5e-159 AT1G73080 1064 / 0.0 PEP1 receptor 1 (.1) Potri.015G141200 [exp] 507 / 7e-159 AT5G07280 1347 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10023323 pacid=23181015 polypeptide=Lus10023323 locus=Lus10023323.g ID=Lus10023323.BGIv1.0 annot-version=v1.0 ATGAAGTCTCACACAGTCTCCATGATTCAGACTACCACCACCCTCTTCCTCCTTTGTTCTTCTCTAATGGCTGCCACTGACGTCATCCCCTCATCACCAA AGAAACCAAACATGATGAAATCCGAAGCAGAAGCCATCAGGTCATTCAAGAACAGCATTACATCCGACCCATTGGGTGCAATTGCAGACTGGAAAGATTC AATCCATCACTGCAACTGGTCAGGAGTAATCTGTGACGATTCGTTAACTCGAATCCTAGCCATTTCCCTCCCTGGAATGGAGCTCCAAGGCCAGATATCT CCTTCTCTAGCCAACATCTCTGCCCTCCAGGTTCTTGACTTATCTTCAAACTCACTCACTGGCTCAATCCCTCCCCAGTTAGGATTCTGCTCACAACTCA CCAACATCACTTTCTTCAACAACTCCCTAACCGGTCCAATTCCAACCGAATTCGGTCACTTAACAAACCTTCTTGCACTAGATGTTGGTGGTAACTATCT AAACGGAACCATTCCCGACACCATTTTTACTAACGTTACCACTCTGTCAGATTTCAATGCGTTCTTCAATAACCTCACCGGTTCAATCTCCGATAAAATA GAGAATCTAGTAAACCTCAGATCCTTCATAGTATCGTCCAATTTCCTGGTAGGTTCGATTCCTCCTTCCATTGGTAGTTTACACAATTTGCAAGTCGTGG ATTTGAGTGATAACCAGCTGACCGGACCGATACCTCGAGAAATGGGGAACCTGTCGAAAAACTTGCAGTACTTGTTGCTGTTTGAGAACTCGTTTTCAGG TCATATTCCTCCCGAGCTTGGTAGGTGTACTCGTCTACTCAATCTCGAACTGTACTCCAACAACTTCACCGGACAGATTCCTCACGAGTTGGGGAATCTG AGCCAGTTGGAGATATTGAGAGTGTACAAAAACCGGCTCAACGGCTCAATCCCACTTTCCTTGACCGGATTGGAGTCGCTGACCAGATTAGGGTTGTCTG AGAATGAGTTGACCGGTTCCATTCCGTCAAAGATTGGATCTTTGCAGTCATTACTGGTACTAACACTACATTCCAACAATTTTTCTGGTGGGATTCCTTC TTCAATCACAAATATTTCATCCTTAGCCTATTTTTCCATAGGGTTCAATTCCTTTACTGGTGAGCTGCCTGCAAATATAGGATCTTTGTACAACTTGCAG AATCTCAGTGCTAATAACAACTTTCTAGAAGGATCTATCCCACCTCAGATCACAAACTGTACCAAACTGTTCACCATAGATCTATCATTTAACAACATTG TTGGGGAGATTCCTAAGGGGATAGGGAAATTGGAGAATCTGACTAGGCTATCTCTTGGGAGGAATCAGATGTCAGGGGAAATTCCTGATGAGCTTTATGA CTGTTTAAGCCTTGAAATCCTGGCTGTGGGAGAGAATAATTTCACTGGAATTATAAATCCAGGAATTGGCCAACTGTCAAAGCTCAAGATTTTGCAACTT GGGTTCAATTCTCTTGAAGGGTCCATACCACCAGAGATTGGGAACTTGAGTAAAGTTGTTACCTTGATGCTTTCTGGTAACCGGTTCACTGGCGAAATCC CACCCGAGTTTTCGAAACTTTCAAGTCTACAAGGGCTTGCCTTACATGGAAATGCTCTACAAGGTAGAATATCAGACAGCTTGTTTGAGCTAAAAAGCTT GACAGTTCTTTTATTGGGGAACAACAAGCTGACAGGGAAGATTCCGGATTCCATCTCGAATCTCTCGATGCTTTCGAATCTAGATCTCCACGGAAACTCA CTCAACGGTTCCATACCGGCCAGCATGAAGAGTTTGAACAAGCTGACATCCATCGACCTCTCTCGCAACAATCTGACCGGAAAAATTCCTGGATCTGTCA TTTCAGGGATGAAAAGTCTACAAATTGTTCTCAACTTCTCGTACAACAATCTCAATGGTTCCATTCCGAACGAGCTTGGTACACTGGATTCCGTCCAGGC CATTGACCTCTCCAACAATGATATTTCCGGAAGCATTCCTGACAGTATCAAGGGATGCGCGAATCTTTTCTCGCTCGATCTGTCAGGAAACAAGATAACC GGTCTGATTCCTGATATGAGTGGTCTCACTACTCTTACAAGCTTGAACCTTTCCAGAAATGAGCTCAACGGTACAATTCCTGAAACCCTTGGTAATCTCA CCTCATTAAAGCAGCTAAACCTGTCGTTCAATCAGCTCGAAGGCCGAGTCCCTCAGACCGGAGTGTTCCAAGACATGGAGGAATCTAACTTGGTAGGGAA TCTTGCTCTGTGTGGAATCAAATCTGTTGGATCCTGCAGCAGTAAGAAAAGTCAAAATCAACGACACAAGTTTCAGAAAAAGACCATATGGATCCTCTCA GCACTGGGTGCAGTATTCCTGCTCCTAGTACTTTCAGTTCTTGTCTCAGTGTTGATAAAACATGTCAAGAGGAAACAGAAGAAGAACGAAAAAATCGTGT CGGAAGAAGGGTCAGGTTTTGGTGTTCATCAGGGGAACCTAGAGAGGTTTGAAAGGAAGGAACTGGAGAAGGCGACTGATTTCTTCAGTGAAGAGAATAA GATCGGTTCGAGCAGTTTGAGCACGGTGTATAAAGGCCGGCTCGAAGATGGACGGGTGATAGCGGTGAAGAAACTCAACTTGGAGAAGTTCTTGTCAGCG AAGGAATCTGATAAGTGTTTCTATAGAGAAGCTAAGACTTTGAGCCAGCTGAGACATAGGAGCTTGGTGAAAGTGGTTGGATATGCTTGGGAGAGTGGGA AGCTTAAGGCTTTGGTTCTGGAGTACATGGAGAATGGGAATCTGGATAGTGTTATTCATGATTCGTCACAGGTTGACCAGTCCAGTAGGTGGACAATACC AGAGCGAATCAACGTATGCATCTCGATCGCAAGCGGACTGGAATATCTCCATACAGGGTACGGCACCCCGATAGTCCACTGCGACTTGAAGCCATCAAAC ATCCTGCTAGACAAAGACTGGATAGCCCACGTCAGCGATTTCGGCACAGCTCGAATCCTGGGCGTCCATCTCCATGACCAAAACAACCCTTCATCAATGT CATCAGCATTTGAAGGCACCATTGGCTACATGGCGCCGGAATTCGCATACATGCGGAGAGTGACCACCAAAGTAGATGTGTTCAGTTTCGGAATAGTGAT GATGGAATTGTTCACGAAACGTAGGCCAACCGGATTGATGGACGATCAAGGGTTTCCGATCAGTCTTTCCCAGCTCGTCCAGAAGGCAGTTTGTGTTGAC ATTGATGATGATGGTGATGAGATTTTGGACGGTGAGATTAGTGGAGAGGCATCATCATTTAAGGTGGTGGAACAAGAGAAAGTTGAAAAGGTGCTGAGGA TTGCCCTGTCTTGTGCTAGACCGAACCCAGAGGATCGTCCCAGCATCAATTCTGTATTGGCTGCCTTGGAGAAGCTCAGAGATGCATGA
AA sequence Show only first row Show all	>Lus10023323 pacid=23181015 polypeptide=Lus10023323 locus=Lus10023323.g ID=Lus10023323.BGIv1.0 annot-version=v1.0 MKSHTVSMIQTTTTLFLLCSSLMAATDVIPSSPKKPNMMKSEAEAIRSFKNSITSDPLGAIADWKDSIHHCNWSGVICDDSLTRILAISLPGMELQGQIS PSLANISALQVLDLSSNSLTGSIPPQLGFCSQLTNITFFNNSLTGPIPTEFGHLTNLLALDVGGNYLNGTIPDTIFTNVTTLSDFNAFFNNLTGSISDKI ENLVNLRSFIVSSNFLVGSIPPSIGSLHNLQVVDLSDNQLTGPIPREMGNLSKNLQYLLLFENSFSGHIPPELGRCTRLLNLELYSNNFTGQIPHELGNL SQLEILRVYKNRLNGSIPLSLTGLESLTRLGLSENELTGSIPSKIGSLQSLLVLTLHSNNFSGGIPSSITNISSLAYFSIGFNSFTGELPANIGSLYNLQ NLSANNNFLEGSIPPQITNCTKLFTIDLSFNNIVGEIPKGIGKLENLTRLSLGRNQMSGEIPDELYDCLSLEILAVGENNFTGIINPGIGQLSKLKILQL GFNSLEGSIPPEIGNLSKVVTLMLSGNRFTGEIPPEFSKLSSLQGLALHGNALQGRISDSLFELKSLTVLLLGNNKLTGKIPDSISNLSMLSNLDLHGNS LNGSIPASMKSLNKLTSIDLSRNNLTGKIPGSVISGMKSLQIVLNFSYNNLNGSIPNELGTLDSVQAIDLSNNDISGSIPDSIKGCANLFSLDLSGNKIT GLIPDMSGLTTLTSLNLSRNELNGTIPETLGNLTSLKQLNLSFNQLEGRVPQTGVFQDMEESNLVGNLALCGIKSVGSCSSKKSQNQRHKFQKKTIWILS ALGAVFLLLVLSVLVSVLIKHVKRKQKKNEKIVSEEGSGFGVHQGNLERFERKELEKATDFFSEENKIGSSSLSTVYKGRLEDGRVIAVKKLNLEKFLSA KESDKCFYREAKTLSQLRHRSLVKVVGYAWESGKLKALVLEYMENGNLDSVIHDSSQVDQSSRWTIPERINVCISIASGLEYLHTGYGTPIVHCDLKPSN ILLDKDWIAHVSDFGTARILGVHLHDQNNPSSMSSAFEGTIGYMAPEFAYMRRVTTKVDVFSFGIVMMELFTKRRPTGLMDDQGFPISLSQLVQKAVCVD IDDDGDEILDGEISGEASSFKVVEQEKVEKVLRIALSCARPNPEDRPSINSVLAALEKLRDA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46330		FLS2	FLAGELLIN-SENSITIVE 2, Leucine...		Lus10023323 [exp]	0	1
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10003394 [exp]	1.4	0.7925
AT2G17120		LYM2	lysm domain GPI-anchored prote...		Lus10014442 [exp]	2.4	0.7786
AT3G26470			Powdery mildew resistance prot...		Lus10021768 [exp]	5.0	0.7246
					Lus10002746 [exp]	5.3	0.7338
AT1G71930	NAC	VND7, ANAC030	Arabidopsis NAC domain contain...		Lus10017915 [exp]	9.8	0.6545
AT1G31320	AS2	LBD4	LOB domain-containing protein ...		Lus10031769 [exp]	12.1	0.6653
AT1G26560		BGLU40	beta glucosidase 40 (.1)		Lus10036885 [exp]	15.5	0.7382
AT2G29060	GRAS		GRAS family transcription fact...		Lus10016520 [exp]	27.7	0.7112
AT4G24040		TREHALASE1, ATT...	trehalase 1 (.1)		Lus10023034 [exp]	29.8	0.6913
AT2G45910			U-box domain-containing protei...		Lus10016557 [exp]	31.0	0.7179

Compare expression of checked genes

Lus10023323 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.