Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46290 107 / 2e-26 HERK1 hercules receptor kinase 1 (.1) AT5G59700 97 / 4e-23 Protein kinase superfamily protein (.1) AT5G61350 96 / 1e-22 Protein kinase superfamily protein (.1) AT4G00300 93 / 7e-22 fringe-related protein (.1.2) AT2G21480 82 / 6e-18 Malectin/receptor-like protein kinase family protein (.1) AT5G54380 81 / 2e-17 THE1 THESEUS1, protein kinase family protein (.1) AT4G39110 79 / 1e-16 Malectin/receptor-like protein kinase family protein (.1) AT2G39360 73 / 9e-15 Protein kinase superfamily protein (.1) AT5G24010 68 / 5e-13 Protein kinase superfamily protein (.1) AT1G30570 63 / 3e-11 HERK2 hercules receptor kinase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038487 [exp] 373 / 2e-129 AT5G59700 293 / 1e-90 Protein kinase superfamily protein (.1) Lus10042844 [exp] 179 / 7e-52 AT3G46290 1025 / 0.0 hercules receptor kinase 1 (.1) Lus10028140 [exp] 178 / 2e-51 AT3G46290 1024 / 0.0 hercules receptor kinase 1 (.1) Lus10028805 [exp] 89 / 6e-20 AT4G39110 1139 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Lus10017478 [exp] 87 / 2e-19 AT4G39110 1149 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Lus10039274 [exp] 77 / 5e-16 AT5G24010 997 / 0.0 Protein kinase superfamily protein (.1) Lus10037887 [exp] 77 / 6e-16 AT5G54380 1279 / 0.0 THESEUS1, protein kinase family protein (.1) Lus10027509 [exp] 76 / 9e-16 AT5G24010 996 / 0.0 Protein kinase superfamily protein (.1) Lus10000562 [exp] 76 / 1e-15 AT5G61350 965 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G234200 [exp] 125 / 1e-32 AT3G46290 1106 / 0.0 hercules receptor kinase 1 (.1) Potri.009G026600 [exp] 120 / 5e-31 AT3G46290 1093 / 0.0 hercules receptor kinase 1 (.1) Potri.010G213200 [exp] 96 / 2e-22 AT3G46290 808 / 0.0 hercules receptor kinase 1 (.1) Potri.014G088100 [exp] 92 / 2e-21 AT4G00300 420 / 1e-143 fringe-related protein (.1.2) Potri.015G061700 [exp] 91 / 5e-21 AT5G61350 1020 / 0.0 Protein kinase superfamily protein (.1) Potri.004G158700 [exp] 84 / 3e-18 AT4G39110 1199 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Potri.004G079700 [exp] 82 / 9e-18 AT5G24010 1031 / 0.0 Protein kinase superfamily protein (.1) Potri.011G128000 [exp] 80 / 4e-17 AT5G54380 1231 / 0.0 THESEUS1, protein kinase family protein (.1) Potri.001G405500 [exp] 79 / 1e-16 AT5G54380 1232 / 0.0 THESEUS1, protein kinase family protein (.1) Potri.009G120400 [exp] 76 / 8e-16 AT4G39110 1210 / 0.0 Malectin/receptor-like protein kinase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023325 pacid=23181006 polypeptide=Lus10023325 locus=Lus10023325.g ID=Lus10023325.BGIv1.0 annot-version=v1.0 ATGGGCGGGCCAATGCTCAACTTCTCTAATGACACCTTATGGCGGACTTGGGTTTCAGATCGTGCATTTCAAGTCGACCCCAGTTCGGTTCAAACATTGA TCAATTCCTTAGCAGTCCGTTACGGCACCGGAGACAGACTAGTCACGGACAAAATCGCTCCAGGGAGTGTCTACGGCACAGCCACGGTGAACACTAATTC GTATGTAAATAATAACAACAGCGTGAGTTGGGAGTTCGATGTGGATGTCGGATACCAGTACTTCATTAGGTTCCACTTTTCCGACATAAGGTTGAACAAT GGCTCGAATTCGAACCCCGACACCAGACGACTCGTGTTAGATGTTGCAATCAATTTAGTGGTGGCTATCAAGGGGTATGACATCGGTTCGGTTACAAATG GTGTGGCAGGTGGTGCGGATTTTCGCGACTTGGTTACGCCGGTAATATCGAACCGGACGCTTCGGGTGAGTATCGGTCCGAGTAATAATTCTTCGAGTGG CTATTGGAATAGTGATGCGTTGCTGAATGGGCTGGAGATCATGAAGATGAACAACTCATGGGGTAGTCTAAGTGGGTCAACTGCTGTGGGTCCGGACTAC AATAATAATGGAGGTGCTGGTTCGGGGAAGAGGTTTGGGCCGGTCCTAGCCGGAGTGTTCAGCATTTTGGTTGTTTTGCTGCTTGCTTGA
AA sequence Show only first row Show all	>Lus10023325 pacid=23181006 polypeptide=Lus10023325 locus=Lus10023325.g ID=Lus10023325.BGIv1.0 annot-version=v1.0 MGGPMLNFSNDTLWRTWVSDRAFQVDPSSVQTLINSLAVRYGTGDRLVTDKIAPGSVYGTATVNTNSYVNNNNSVSWEFDVDVGYQYFIRFHFSDIRLNN GSNSNPDTRRLVLDVAINLVVAIKGYDIGSVTNGVAGGADFRDLVTPVISNRTLRVSIGPSNNSSSGYWNSDALLNGLEIMKMNNSWGSLSGSTAVGPDY NNNGGAGSGKRFGPVLAGVFSILVVLLLA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G46290		HERK1	hercules receptor kinase 1 (.1...		Lus10023325 [exp]	0	1
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10008919 [exp]	3.0	0.9539
AT2G26490			Transducin/WD40 repeat-like su...		Lus10016289 [exp]	4.2	0.9539
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10022912 [exp]	4.7	0.8973
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Lus10023564 [exp]	4.9	0.8754
AT3G18080		BGLU44	B-S glucosidase 44 (.1)		Lus10017997 [exp]	5.2	0.9539
AT5G09360		LAC14	laccase 14 (.1)		Lus10036070 [exp]	6.0	0.9539
AT4G02050		STP7	sugar transporter protein 7 (....		Lus10008372 [exp]	6.7	0.9539
AT1G08080		ATACA7, ACA7	A. THALIANA ALPHA CARBONIC ANH...		Lus10021456 [exp]	7.7	0.9492
AT1G55790			Domain of unknown function (DU...		Lus10032900 [exp]	7.9	0.9383
					Lus10014629 [exp]	8.9	0.9243

Compare expression of checked genes

Lus10023325 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.