Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50440 263 / 3e-88 ATMES10 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) AT2G23600 211 / 4e-68 ATMES2, ACL, ATME8 ARABIDOPSIS THALIANA METHYL ESTERASE 2, ARABIDOPSIS METHYL ESTERASE 8, acetone-cyanohydrin lyase (.1) AT2G23610 211 / 5e-68 ATMES3 ARABIDOPSIS THALIANA METHYL ESTERASE 3, methyl esterase 3 (.1) AT4G37150 205 / 8e-66 ATMES9 ARABIDOPSIS THALIANA METHYL ESTERASE 9, methyl esterase 9 (.1) AT2G23560 205 / 1e-65 ATMES7 ARABIDOPSIS THALIANA METHYL ESTERASE 7, methyl esterase 7 (.1) AT2G23550 205 / 1e-65 ATMES6, ABE1 ALPHA/BETA FOLD HYDROLASE/ESTERASE 1, methyl esterase 6 (.1.2) AT2G23580 202 / 1e-64 ATMES4, ABE4 ARABIDOPSIS THALIANA METHYL ESTERASE 4, ALPHA/BETA FOLD HYDROLASE/ESTERASE 4, methyl esterase 4 (.1.2) AT2G23620 198 / 7e-63 ATMES1 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) AT2G23590 198 / 9e-63 ATMES8 methyl esterase 8 (.1) AT5G10300 197 / 1e-62 AtHNL, HNL, ATMES5 HYDROXYNITRILE LYASE, ARABIDOPSIS THALIANA METHYL ESTERASE 5, methyl esterase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022467 [exp] 249 / 9e-83 AT3G50440 238 / 2e-78 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Lus10015532 [exp] 239 / 7e-79 AT2G23600 240 / 2e-79 ARABIDOPSIS THALIANA METHYL ESTERASE 2, ARABIDOPSIS METHYL ESTERASE 8, acetone-cyanohydrin lyase (.1) Lus10038486 [exp] 208 / 1e-67 AT3G50440 112 / 3e-30 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Lus10038592 [exp] 207 / 4e-66 AT2G23620 306 / 4e-105 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Lus10000841 [exp] 201 / 4e-65 AT2G23570 129 / 1e-37 ARABIDOPSIS THALIANA METHYL ESTERASE 19, methyl esterase 19 (.1) Lus10005402 [exp] 203 / 1e-64 AT2G23580 204 / 3e-65 ARABIDOPSIS THALIANA METHYL ESTERASE 4, ALPHA/BETA FOLD HYDROLASE/ESTERASE 4, methyl esterase 4 (.1.2) Lus10005400 [exp] 202 / 1e-64 AT2G23610 206 / 8e-66 ARABIDOPSIS THALIANA METHYL ESTERASE 3, methyl esterase 3 (.1) Lus10009203 [exp] 194 / 2e-60 AT2G23620 205 / 6e-65 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Lus10009205 [exp] 177 / 1e-54 AT2G23580 194 / 3e-61 ARABIDOPSIS THALIANA METHYL ESTERASE 4, ALPHA/BETA FOLD HYDROLASE/ESTERASE 4, methyl esterase 4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G107200 [exp] 253 / 3e-84 AT3G50440 244 / 4e-80 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Potri.009G107500 [exp] 253 / 4e-84 AT3G50440 240 / 1e-78 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Potri.007G036700 [exp] 244 / 3e-81 AT2G23610 244 / 8e-81 ARABIDOPSIS THALIANA METHYL ESTERASE 3, methyl esterase 3 (.1) Potri.007G036800 [exp] 229 / 4e-74 AT2G23560 230 / 2e-74 ARABIDOPSIS THALIANA METHYL ESTERASE 7, methyl esterase 7 (.1) Potri.007G037700 [exp] 222 / 4e-72 AT2G23620 300 / 6e-103 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.007G037300 [exp] 216 / 1e-69 AT2G23620 289 / 2e-98 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.007G037100 [exp] 191 / 2e-60 AT2G23620 235 / 1e-77 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.005G133700 [exp] 191 / 3e-60 AT2G23620 277 / 6e-94 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.007G037033 [exp] 191 / 5e-60 AT2G23620 238 / 2e-78 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.007G037200 [exp] 191 / 5e-60 AT2G23620 238 / 2e-78 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10023326 pacid=23181099 polypeptide=Lus10023326 locus=Lus10023326.g ID=Lus10023326.BGIv1.0 annot-version=v1.0 ATGACGAACAACCACTTCGTTTTAGTTCACGGCACCGGCCACGGCGCCTGGTGCTGGTTCAAAATTGTCGCGCTCCTCAAATCTTCAGGGCATCAAGTCA CTGCCTTGGACCTCGGCGGCAGTGGCATCAACTTGGATCAAGTTTCTTCTTCCATCTCTGATTACGTGAATCCACTGATTCAGTTCATGGCCTCACTTCC GGAGCAAGACAGGGTCATCCTCGTTGGTCATAGCTTCGGTGGGATATCCATCTCCCTCGCCGTTGAACAATTTCCGACCAAGGTCCTTGCTGCTGTTTTT GTCACGGCGATGATGCCTGGCTTCAACTCCCCTCCTGCTGATGTGGTCATGGAGTTCTTCGGAAGGACGCCGGCAGAGTCACTAATGGACAGTCAGGTCA ACTTCGCAGATGGACCTGAAAGCCTACCGACTTCAGCCTTGTTTGGATCCTGTCACATGGCTCAACGTGTCTATCAGAATTGTCAAATCCAGGATCTGGA ACTGGCGAAGCTGCTGATAAGGGAAACAGGACTGTTCTTGAAAGATCTGTCTCGGGAATCTCTACTGACAGAGGAGAGATTTGGTTCAACAAAGAGATTT TACATTGTGGCAGAAGAGGATCAACTTATGAAGAAGGACTTGCAAGAATGGTTCATTCATAACAATCCAACTCAGGATGTCAAGTACATTCCAGGGGCTG ATCATATGATTATGCTCTCTAAGCCTCATGAGCTTTACTCTTCTCTTCTTGATATTTACGGGTCGTTTGATGGAGCAAAATGGTGA
AA sequence Show only first row Show all	>Lus10023326 pacid=23181099 polypeptide=Lus10023326 locus=Lus10023326.g ID=Lus10023326.BGIv1.0 annot-version=v1.0 MTNNHFVLVHGTGHGAWCWFKIVALLKSSGHQVTALDLGGSGINLDQVSSSISDYVNPLIQFMASLPEQDRVILVGHSFGGISISLAVEQFPTKVLAAVF VTAMMPGFNSPPADVVMEFFGRTPAESLMDSQVNFADGPESLPTSALFGSCHMAQRVYQNCQIQDLELAKLLIRETGLFLKDLSRESLLTEERFGSTKRF YIVAEEDQLMKKDLQEWFIHNNPTQDVKYIPGADHMIMLSKPHELYSSLLDIYGSFDGAKW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50440		ATMES10	ARABIDOPSIS THALIANA METHYL ES...		Lus10023326 [exp]	0	1
AT1G27170			transmembrane receptors;ATP bi...		Lus10032101 [exp]	3.9	0.8805
AT1G80660		AHA9	H\(+\)-ATPase 9, H\(+\)-ATPase...		Lus10042445 [exp]	4.7	0.9160
AT1G29390		COR413IM2, COR3...	COLD REGULATED 314 INNER MEMBR...		Lus10015258 [exp]	4.7	0.8823
AT5G47860			Protein of unknown function (D...		Lus10024193 [exp]	6.8	0.8551
AT4G14750		IQD19	IQ-domain 19 (.1)		Lus10006613 [exp]	7.1	0.8398
AT1G52190			Major facilitator superfamily ...		Lus10025802 [exp]	7.3	0.8726
AT3G55370	DOF	OBP3, AtDof3. 6	OBF-binding protein 3 (.1.2.3)		Lus10029458 [exp]	16.2	0.8663
AT5G06370			NC domain-containing protein-r...		Lus10004198 [exp]	16.7	0.8650
AT2G17700		STY8	serine/threonine/tyrosine kina...		Lus10004153 [exp]	17.5	0.8763
AT2G19770		PRF5	profilin 5 (.1)		Lus10037591 [exp]	17.5	0.8511

Compare expression of checked genes

Lus10023326 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.