Plant FIBer expression Database

Lus10023327 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G02640 63 / 5e-13 unknown protein
AT3G46310 43 / 6e-06 unknown protein
AT3G46300 41 / 7e-05 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038485
[exp]
230 / 1e-78 AT5G02640 73 / 9e-17 unknown protein
Lus10037654
[exp]
100 / 6e-28 ND 41 / 2e-05
Lus10015636
[exp]
84 / 2e-21 ND /
Lus10025282
[exp]
69 / 4e-15 AT5G02640 130 / 4e-39 unknown protein
Lus10009066
[exp]
59 / 2e-11 AT5G02640 107 / 8e-30 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G081600
[exp]
79 / 4e-19 AT5G02640 144 / 1e-44 unknown protein
Potri.006G215000
[exp]
78 / 1e-18 AT5G02640 144 / 1e-44 unknown protein
PFAM info
Representative CDS sequence
>Lus10023327 pacid=23181020 polypeptide=Lus10023327 locus=Lus10023327.g ID=Lus10023327.BGIv1.0 annot-version=v1.0
ATGGCGTCTTCCTGCATATCGAGCTGCTTGAAAGACGTGGCGGTCCACCTCCCGACAACATCGTTGCGATACGCCAGGCTCTCGGTCTCGGACCAGCCGG
AGACGCCAGGAGAGTCCGGGAGGTTCGCGAGCTTCGAGGAGAGGTGTCGAGGACATCCGAAAGTGGTGGACAGCATCTCCTGCAGGCAGCTGTACCTTAG
GAGCTACACCTTCTCCCGGAAGGAGAGCTTCTCGGACAAAACGAAGCGTTGCGTCGGGAAAGTTACCGAGACTGTGAAGAAGAAGAAGAAGAAGAGGAAG
AAGAAGAAGAAGGGGAGTACTGGGGTGGTGGTTTTGAGGAGGAGGAATTCGACGGCGGCGATGGTTTGTTTGAGGAAGGCGAGTAAGGTGACGTGTTCGG
CTGTGATGAAGGTTGTAAGGAGACTGATGATGTCTTGCACTACCAGGGTCGATACGGCAGCCGATTAA
AA sequence
>Lus10023327 pacid=23181020 polypeptide=Lus10023327 locus=Lus10023327.g ID=Lus10023327.BGIv1.0 annot-version=v1.0
MASSCISSCLKDVAVHLPTTSLRYARLSVSDQPETPGESGRFASFEERCRGHPKVVDSISCRQLYLRSYTFSRKESFSDKTKRCVGKVTETVKKKKKKRK
KKKKGSTGVVVLRRRNSTAAMVCLRKASKVTCSAVMKVVRRLMMSCTTRVDTAAD

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G02640 unknown protein Lus10023327
[exp]
0 1
AT3G61930 unknown protein Lus10002685
[exp]
3.2 0.8600
AT2G32260 ATCCT1 phosphorylcholine cytidylyltra... Lus10003808
[exp]
10.4 0.8714
AT2G16530 3-oxo-5-alpha-steroid 4-dehydr... Lus10042055
[exp]
12.0 0.8657
AT3G22960 PKP-ALPHA, PKP1 PLASTIDIAL PYRUVATE KINASE 1, ... Lus10033757
[exp]
14.9 0.8423
AT3G61930 unknown protein Lus10030203
[exp]
16.4 0.8583
AT1G03620 ELMO/CED-12 family protein (.1... Lus10039805
[exp]
16.5 0.8761
AT2G44130 Galactose oxidase/kelch repeat... Lus10016214
[exp]
26.3 0.8126
AT5G46060 Protein of unknown function, D... Lus10005266
[exp]
27.5 0.8624
AT1G68290 ENDO2 ,ENDO 2 endonuclease 2 (.1) Lus10034336
[exp]
40.5 0.8458
AT5G17450 HIPP21 heavy metal associated isopren... Lus10009115
[exp]
50.9 0.8094

Lus10023327 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.